PDB 2o4v citation summary ‹ Protein Data Bank in Europe (PDBe)

The structural biology of β-barrel membrane proteins: a summary of recent reports. Fairman JW, Noinaj N, Buchanan SK. Curr Opin Struct Biol 21 523-531 (2011)
The bacterial outer membrane β-barrel assembly machinery. Kim KH, Aulakh S, Paetzel M. Protein Sci 21 751-768 (2012)

Pi-Pi contacts are an overlooked protein feature relevant to phase separation. Vernon RM, Chong PA, Tsang B, Kim TH, Bah A, Farber P, Lin H, Forman-Kay JD. Elife 7 e31486 (2018)
Unusual arginine formations in protein function and assembly: rings, strings, and stacks. Neves MA, Yeager M, Abagyan R. J Phys Chem B 116 7006-7013 (2012)
Predicting weakly stable regions, oligomerization state, and protein-protein interfaces in transmembrane domains of outer membrane proteins. Naveed H, Jackups R, Liang J. Proc Natl Acad Sci U S A 106 12735-12740 (2009)
Simulations of anion transport through OprP reveal the molecular basis for high affinity and selectivity for phosphate. Pongprayoon P, Beckstein O, Wee CL, Sansom MS. Proc Natl Acad Sci U S A 106 21614-21618 (2009)
Finding and characterizing tunnels in macromolecules with application to ion channels and pores. Coleman RG, Sharp KA. Biophys J 96 632-645 (2009)
Iron Oxidation by a Fused Cytochrome-Porin Common to Diverse Iron-Oxidizing Bacteria. Keffer JL, McAllister SM, Garber AI, Hallahan BJ, Sutherland MC, Rozovsky S, Chan CS. mBio 12 e0107421 (2021)
Structure, Dynamics, and Substrate Specificity of the OprO Porin from Pseudomonas aeruginosa. Modi N, Ganguly S, Bárcena-Uribarri I, Benz R, van den Berg B, Kleinekathöfer U. Biophys J 109 1429-1438 (2015)
TtOmp85, a β-barrel assembly protein, functions by barrel augmentation. Estrada Mallarino L, Fan E, Odermatt M, Müller M, Lin M, Liang J, Heinzelmann M, Fritsche F, Apell HJ, Welte W. Biochemistry 54 844-852 (2015)
Detecting remote homologues using scoring matrices calculated from the estimation of amino acid substitution rates of beta-barrel membrane proteins. Jimenez-Morales D, Adamian L, Liang J. Annu Int Conf IEEE Eng Med Biol Soc 2008 1347-1350 (2008)
In Silico Structure and Sequence Analysis of Bacterial Porins and Specific Diffusion Channels for Hydrophilic Molecules: Conservation, Multimericity and Multifunctionality. Vollan HS, Tannæs T, Vriend G, Bukholm G. Int J Mol Sci 17 E599 (2016)
Engineering a Novel Porin OmpGF Via Strand Replacement from Computational Analysis of Sequence Motif. Lin M, Zhang G, Fahie M, Morgan LK, Chen M, Keiderling TA, Kenney LJ, Liang J. Biochim Biophys Acta Biomembr 1859 1180-1189 (2017)
A graph-theoretic approach for classification and structure prediction of transmembrane β-barrel proteins. Tran Vdu T, Chassignet P, Sheikh S, Steyaert JM. BMC Genomics 13 Suppl 2 S5 (2012)

Microbe-host interactions: structure and role of Gram-negative bacterial porins. Galdiero S, Falanga A, Cantisani M, Tarallo R, Della Pepa ME, D'Oriano V, Galdiero M. Curr Protein Pept Sci 13 843-854 (2012)
Modeling and simulation of ion channels. Maffeo C, Bhattacharya S, Yoo J, Wells D, Aksimentiev A. Chem Rev 112 6250-6284 (2012)
Porins in prokaryotes and eukaryotes: common themes and variations. Zeth K, Thein M. Biochem J 431 13-22 (2010)
Protein oligomerization in the bacterial outer membrane (Review). Meng G, Fronzes R, Chandran V, Remaut H, Waksman G. Mol Membr Biol 26 136-145 (2009)
Molecular Simulations of Gram-Negative Bacterial Membranes: A Vignette of Some Recent Successes. Parkin J, Chavent M, Khalid S. Biophys J 109 461-468 (2015)
Forward or backward, that is the question: phospholipid trafficking by the Mla system. Abellon-Ruiz J. Emerg Top Life Sci 7 125-135 (2023)

Substrate specificity within a family of outer membrane carboxylate channels. Eren E, Vijayaraghavan J, Liu J, Cheneke BR, Touw DS, Lepore BW, Indic M, Movileanu L, van den Berg B. PLoS Biol 10 e1001242 (2012)
Altered antibiotic transport in OmpC mutants isolated from a series of clinical strains of multi-drug resistant E. coli. Lou H, Chen M, Black SS, Bushell SR, Ceccarelli M, Mach T, Beis K, Low AS, Bamford VA, Booth IR, Bayley H, Naismith JH. PLoS One 6 e25825 (2011)
Structural insight into OprD substrate specificity. Biswas S, Mohammad MM, Patel DR, Movileanu L, van den Berg B. Nat Struct Mol Biol 14 1108-1109 (2007)
Crystal structure of the outer membrane protein OpdK from Pseudomonas aeruginosa. Biswas S, Mohammad MM, Movileanu L, van den Berg B. Structure 16 1027-1035 (2008)
Insights into outer membrane protein crystallization. Newstead S, Hobbs J, Jordan D, Carpenter EP, Iwata S. Mol Membr Biol 25 631-638 (2008)
Structural basis for outer membrane sugar uptake in pseudomonads. van den Berg B. J Biol Chem 287 41044-41052 (2012)
A 3-dimensional trimeric β-barrel model for Chlamydia MOMP contains conserved and novel elements of Gram-negative bacterial porins. Feher VA, Randall A, Baldi P, Bush RM, de la Maza LM, Amaro RE. PLoS One 8 e68934 (2013)
OccK channels from Pseudomonas aeruginosa exhibit diverse single-channel electrical signatures but conserved anion selectivity. Liu J, Eren E, Vijayaraghavan J, Cheneke BR, Indic M, van den Berg B, Movileanu L. Biochemistry 51 2319-2330 (2012)
Structure and function of the PorB porin from disseminating Neisseria gonorrhoeae. Zeth K, Kozjak-Pavlovic V, Faulstich M, Fraunholz M, Hurwitz R, Kepp O, Rudel T. Biochem J 449 631-642 (2013)
NanC crystal structure, a model for outer-membrane channels of the acidic sugar-specific KdgM porin family. Wirth C, Condemine G, Boiteux C, Bernèche S, Schirmer T, Peneff CM. J Mol Biol 394 718-731 (2009)
Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii. Zahn M, Bhamidimarri SP, Baslé A, Winterhalter M, van den Berg B. Structure 24 221-231 (2016)
Structural and dynamical properties of the porins OmpF and OmpC: insights from molecular simulations. Kumar A, Hajjar E, Ruggerone P, Ceccarelli M. J Phys Condens Matter 22 454125 (2010)
Structural basis for chitin acquisition by marine Vibrio species. Aunkham A, Zahn M, Kesireddy A, Pothula KR, Schulte A, Baslé A, Kleinekathöfer U, Suginta W, van den Berg B. Nat Commun 9 220 (2018)
Atomistic molecular-dynamics simulations enable prediction of the arginine permeation pathway through OccD1/OprD from Pseudomonas aeruginosa. Parkin J, Khalid S. Biophys J 107 1853-1861 (2014)
Single-channel properties, sugar specificity, and role of chitoporin in adaptive survival of Vibrio cholerae type strain O1. Soysa HSM, Aunkham A, Schulte A, Suginta W. J Biol Chem 295 9421-9432 (2020)
A Genome-Scale Model of Shewanella piezotolerans Simulates Mechanisms of Metabolic Diversity and Energy Conservation. Dufault-Thompson K, Jian H, Cheng R, Li J, Wang F, Zhang Y. mSystems 2 e00165-16 (2017)
Characterization of a Novel Porin-Like Protein, ExtI, from Geobacter sulfurreducens and Its Implication in the Reduction of Selenite and Tellurite. Jahan MI, Tobe R, Mihara H. Int J Mol Sci 19 E809 (2018)
OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins. Roumia AF, Tsirigos KD, Theodoropoulou MC, Tamposis IA, Hamodrakas SJ, Bagos PG. Front Bioinform 1 646581 (2021)
Computational and biochemical design of a nanopore cleavable by a cancer-secreted enzyme. Pittel I, Alper N, Yonai S, Basch S, Blum L, Bachur A, Paas Y. Chembiochem 16 463-471 (2015)
Conversion of OprO into an OprP-like Channel by Exchanging Key Residues in the Channel Constriction. Ganguly S, Kesireddy A, Bárcena-Uribarri I, Kleinekathöfer U, Benz R. Biophys J 113 829-834 (2017)
Effect of natural polymorphism on structure and function of the Yersinia pestis outer membrane porin F (OmpF protein): a computational study. Shaban H, Na I, Kislichkina AA, Dentovskaya SV, Anisimov AP, Uversky VN. J Biomol Struct Dyn 35 2588-2603 (2017)
Probing the binding affinities of imipenem and ertapenem for outer membrane carboxylate channel D1 (OccD1) from P. aeruginosa: simulation studies. Somboon K, Niramitranon J, Pongprayoon P. J Mol Model 23 227 (2017)

Protein Data Bank in Europe

An arginine ladder in OprP mediates phosphate-specific transfer across the outer membrane.

Abstract

Reviews - 2o4v mentioned but not cited (2)

Articles - 2o4v mentioned but not cited (12)

Reviews citing this publication (6)

Articles citing this publication (22)

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2o4v › Citations

An arginine ladder in OprP mediates phosphate-specific transfer across the outer membrane.

Abstract

Reviews - 2o4v mentioned but not cited (2)

Articles - 2o4v mentioned but not cited (12)

Reviews citing this publication (6)

Articles citing this publication (22)

Quick links