› 2opw

X-ray diffraction
1.9Å resolution

Crystal structure of human phytanoyl-CoA dioxygenase PHYHD1 (apo)

Released:
DOI: 10.2210/pdb2opw/pdb
PDB entry 2opw coloured by chain, front view.
PDB entry 2opw coloured by chain, side view.
PDB entry 2opw coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Zhang Z, Butler D, McDonough MA, Kavanagh KL, Bray JE, Ng SS, von Delft F, Arrowsmith CH, Weigelt J, Edwards A, Sundstrom M, Schofield CJ, Oppermann U, Structural Genomics Consortium (SGC)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-178276 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phytanoyl-CoA dioxygenase domain-containing protein 1 Chain: A
Molecule details ›
Chain: A
Length: 291 amino acids
Theoretical weight: 32.45 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5SRE7 (Residues: 1-291; Coverage: 100%)
Gene name: PHYHD1
Sequence domains: Phytanoyl-CoA dioxygenase (PhyH)
Structure domains: q2cbj1_9rhob like domain

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X10SA
Spacegroup: P3121
Unit cell:
a: 91.97Å b: 91.97Å c: 81.61Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.221 0.219 0.258
Expression system: Escherichia coli

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