Articles - 2ot4 mentioned but not cited (2)
- A New Paradigm of Multiheme Cytochrome Evolution by Grafting and Pruning Protein Modules. Soares R, Costa NL, Paquete CM, Andreini C, Louro RO. Mol Biol Evol 39 msac139 (2022)
- Structural adaptations of octaheme nitrite reductases from haloalkaliphilic Thioalkalivibrio bacteria to alkaline pH and high salinity. Popinako A, Antonov M, Tikhonov A, Tikhonova T, Popov V. PLoS ONE 12 e0177392 (2017)
Reviews citing this publication (8)
- How to make a living from anaerobic ammonium oxidation. Kartal B, de Almeida NM, Maalcke WJ, Op den Camp HJ, Jetten MS, Keltjens JT. FEMS Microbiol. Rev. 37 428-461 (2013)
- Metalloprotein design using genetic code expansion. Hu C, Chan SI, Sawyer EB, Yu Y, Wang J. Chem Soc Rev 43 6498-6510 (2014)
- Understanding and applying tyrosine biochemical diversity. Jones LH, Narayanan A, Hett EC. Mol Biosyst 10 952-969 (2014)
- Anammox Biochemistry: a Tale of Heme c Proteins. Kartal B, Keltjens JT. Trends Biochem. Sci. 41 998-1011 (2016)
- Characterization of the active site and calcium binding in cytochrome c nitrite reductases. Lockwood CW, Clarke TA, Butt JN, Hemmings AM, Richardson DJ. Biochem. Soc. Trans. 39 1871-1875 (2011)
- Octaheme nitrite reductases: structure and properties. Tikhonova TV, Trofimov AA, Popov VO. Biochemistry Mosc. 77 1129-1138 (2012)
- Improving artificial metalloenzymes' activity by optimizing electron transfer. Hu C, Yu Y, Wang J. Chem. Commun. (Camb.) 53 4173-4186 (2017)
- Multiheme proteins: effect of heme-heme interactions. Lai D, Khan FST, Rath SP. Dalton Trans 47 14388-14401 (2018)
Articles citing this publication (30)
- Heme proteins--diversity in structural characteristics, function, and folding. Smith LJ, Kahraman A, Thornton JM. Proteins 78 2349-2368 (2010)
- A systematic investigation of multiheme c-type cytochromes in prokaryotes. Sharma S, Cavallaro G, Rosato A. J. Biol. Inorg. Chem. 15 559-571 (2010)
- Structural basis of biological NO generation by octaheme oxidoreductases. Maalcke WJ, Dietl A, Marritt SJ, Butt JN, Jetten MS, Keltjens JT, Barends TR, Kartal B. J. Biol. Chem. 289 1228-1242 (2014)
- Synchrotron X-ray-induced photoreduction of ferric myoglobin nitrite crystals gives the ferrous derivative with retention of the O-bonded nitrite ligand. Yi J, Orville AM, Skinner JM, Skinner MJ, Richter-Addo GB. Biochemistry 49 5969-5971 (2010)
- Substrate binding and activation in the active site of cytochrome c nitrite reductase: a density functional study. Bykov D, Neese F. J. Biol. Inorg. Chem. 16 417-430 (2011)
- Probing the function of the Tyr-Cys cross-link in metalloenzymes by the genetic incorporation of 3-methylthiotyrosine. Zhou Q, Hu M, Zhang W, Jiang L, Perrett S, Zhou J, Wang J. Angew. Chem. Int. Ed. Engl. 52 1203-1207 (2013)
- Comparative structural and functional analysis of two octaheme nitrite reductases from closely related Thioalkalivibrio species. Tikhonova T, Tikhonov A, Trofimov A, Polyakov K, Boyko K, Cherkashin E, Rakitina T, Sorokin D, Popov V. FEBS J. 279 4052-4061 (2012)
- The octahaem MccA is a haem c-copper sulfite reductase. Hermann B, Kern M, La Pietra L, Simon J, Einsle O. Nature 520 706-709 (2015)
- Identifying proteins that can form tyrosine-cysteine crosslinks. Martinie RJ, Godakumbura PI, Porter EG, Divakaran A, Burkhart BJ, Wertz JT, Benson DE. Metallomics 4 1037-42, 1008 (2012)
- Probing the Cys-Tyr Cofactor Biogenesis in Cysteine Dioxygenase by the Genetic Incorporation of Fluorotyrosine. Li J, Koto T, Davis I, Liu A. Biochemistry 58 2218-2227 (2019)
- Reductive activation of the heme iron-nitrosyl intermediate in the reaction mechanism of cytochrome c nitrite reductase: a theoretical study. Bykov D, Neese F. J. Biol. Inorg. Chem. 17 741-760 (2012)
- Structures of complexes of octahaem cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens with sulfite and cyanide. Trofimov AA, Polyakov KM, Boyko KM, Tikhonova TV, Safonova TN, Tikhonov AV, Popov AN, Popov VO. Acta Crystallogr. D Biol. Crystallogr. 66 1043-1047 (2010)
- Contrasting catalytic profiles of multiheme nitrite reductases containing CxxCK heme-binding motifs. Doyle RM, Marritt SJ, Gwyer JD, Lowe TG, Tikhonova TV, Popov VO, Cheesman MR, Butt JN. J. Biol. Inorg. Chem. 18 655-667 (2013)
- Hidden relationships between metalloproteins unveiled by structural comparison of their metal sites. Valasatava Y, Andreini C, Rosato A. Sci Rep 5 9486 (2015)
- Characterization of a nitrite-reducing octaheme hydroxylamine oxidoreductase that lacks the tyrosine cross-link. Ferousi C, Schmitz RA, Maalcke WJ, Lindhoud S, Versantvoort W, Jetten MSM, Reimann J, Kartal B. J Biol Chem 296 100476 (2021)
- Covalent modifications of the catalytic tyrosine in octahaem cytochrome c nitrite reductase and their effect on the enzyme activity. Trofimov AA, Polyakov KM, Tikhonova TV, Tikhonov AV, Safonova TN, Boyko KM, Dorovatovskii PV, Popov VO. Acta Crystallogr. D Biol. Crystallogr. 68 144-153 (2012)
- Heme-bound nitroxyl, hydroxylamine, and ammonia ligands as intermediates in the reaction cycle of cytochrome c nitrite reductase: a theoretical study. Bykov D, Plog M, Neese F. J. Biol. Inorg. Chem. 19 97-112 (2014)
- Structural study of the X-ray-induced enzymatic reaction of octahaem cytochrome C nitrite reductase. Trofimov AA, Polyakov KM, Lazarenko VA, Popov AN, Tikhonova TV, Tikhonov AV, Popov VO. Acta Crystallogr. D Biol. Crystallogr. 71 1087-1094 (2015)
- Cleavage of a carbon-fluorine bond by an engineered cysteine dioxygenase. Li J, Griffith WP, Davis I, Shin I, Wang J, Li F, Wang Y, Wherritt DJ, Liu A. Nat. Chem. Biol. 14 853-860 (2018)
- Distal pocket control of nitrite binding in myoglobin. Yi J, Thomas LM, Richter-Addo GB. Angew. Chem. Int. Ed. Engl. 51 3625-3627 (2012)
- A 2.2 Å cryoEM structure of a quinol-dependent NO Reductase shows close similarity to respiratory oxidases. Flynn AJ, Antonyuk SV, Eady RR, Muench SP, Hasnain SS. Nat Commun 14 3416 (2023)
- Characterization of the T-cell Repertoire after Autologous HSCT in Patients with Ankylosing Spondylitis. Komech EA, Zvyagin IV, Pogorelyy MV, Mamedov IZ, Fedorenko DA, Lebedev YB. Acta Naturae 10 48-57 (2018)
- Elucidation of the Correlation between Heme Distortion and Tertiary Structure of the Heme-Binding Pocket Using a Convolutional Neural Network. Kondo HX, Iizuka H, Masumoto G, Kabaya Y, Kanematsu Y, Takano Y. Biomolecules 12 1172 (2022)
- Elucidation of the heme active site electronic structure affecting the unprecedented nitrite dismutase activity of the ferriheme b proteins, the nitrophorins. He C, Ogata H, Lubitz W. Chem Sci 7 5332-5340 (2016)
- Homology modeling and virtual characterization of cytochrome c nitrite reductase (NrfA) in three model bacteria responsible for short-circuit pathway, DNRA in the terrestrial nitrogen cycle. Kaviraj M, Kumar U, Nayak AK, Chatterjee S. World J Microbiol Biotechnol 38 168 (2022)
- In meso crystal structure of a novel membrane-associated octaheme cytochrome c from the Crenarchaeon Ignicoccus hospitalis. Parey K, Fielding AJ, Sörgel M, Rachel R, Huber H, Ziegler C, Rajendran C. FEBS J. 283 3807-3820 (2016)
- LifeSoaks: a tool for analyzing solvent channels in protein crystals and obstacles for soaking experiments. Pletzer-Zelgert J, Ehrt C, Fender I, Griewel A, Flachsenberg F, Klebe G, Rarey M. Acta Crystallogr D Struct Biol 79 837-856 (2023)
- Nitrosyl Myoglobins and Their Nitrite Precursors: Crystal Structural and Quantum Mechanics and Molecular Mechanics Theoretical Investigations of Preferred Fe -NO Ligand Orientations in Myoglobin Distal Pockets. Wang B, Shi Y, Tejero J, Powell SM, Thomas LM, Gladwin MT, Shiva S, Zhang Y, Richter-Addo GB. Biochemistry 57 4788-4802 (2018)
- Role of distal arginine residue in the mechanism of heme nitrite reductases. Sarkar A, Bhakta S, Chattopadhyay S, Dey A. Chem Sci 14 7875-7886 (2023)
- Three-Dimensional Structure of Cytochrome c Nitrite Reductase As Determined by Cryo-Electron Microscopy. Baymukhametov TN, Chesnokov YM, Pichkur EB, Boyko KM, Tikhonova TV, Myasnikov AG, Vasiliev AL, Lipkin AV, Popov VO, Kovalchuk MV. Acta Naturae 10 48-56 (2018)
Related citations provided by authors (4)
- Crystallization and preliminary X-ray analysis of cytochrome c nitrite reductase from Thialkalivibrio nitraterecense.. Boyko KM, Polyakov KM, Tikhonova TV, Slutsky A, Antipov AN, Zvyagilskaya RA, Bourenkov GP, Popov AN, Lamzin VS, Popov VO Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 26 215-217 (2006)
- Molecular and catalytic properties of a novel cytochrome c nitrite reductase from nitrate-reducing haloalkaliphic sulfur-oxidixing bacterium Thioalkalivibrio nitratireducens.. Tikhonova TV, Slutsky A, Antipov AN, Boyko KM, Polyakov KM, Sorokin DY, Zvyagilskaya RA, Popov VO Biochim. Biophys. Acta 1764 715-723 (2006)
- Structures of complexes of octahaem cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens with sulfite and cyanide.. Trofimov AA, Polyakov KM, Boyko KM, Tikhonova TV, Safonova TN, Tikhonov AV, Popov AN, Popov VO Acta Crystallogr D Biol Crystallogr 66 1043-7 (2010)
- Structure of octaheme cytochrome c nitrite reductase from Thioalkalivibrio nitratireducens in a complex with phosphate. Trofimov AA, Polyakov KM, Boiko KM, Filimonenkov AA, Dorovatovskii PV, Tikhonova TV, Popov VO, Kovalchuk MV Crystallography Reports 55 58-64 (2010)