› 2pfw

X-ray diffraction
1.9Å resolution

CRYSTAL STRUCTURE OF A RMLC-LIKE CUPIN (SFRI_3105) FROM SHEWANELLA FRIGIDIMARINA NCIMB 400 AT 1.90 A RESOLUTION

Released:
DOI: 10.2210/pdb2pfw/pdb
PDB entry 2pfw coloured by chain, front view.
PDB entry 2pfw coloured by chain, side view.
PDB entry 2pfw coloured by chain, top view.
Source organism: Shewanella frigidimarina NCIMB 400
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170584 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Cupin type-2 domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 116 amino acids
Theoretical weight: 12.88 KDa
Source organism: Shewanella frigidimarina NCIMB 400
Expression system: Escherichia coli
UniProt:
  • Canonical: Q07YH2 (Residues: 1-115; Coverage: 100%)
Gene name: Sfri_3105
Sequence domains: Cupin domain
Structure domains: Jelly Rolls

Ligands and Environments

1 bound ligand:
Ligand EDO 5 x EDO
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P212121
Unit cell:
a: 58.5Å b: 73.14Å c: 73.13Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.193 0.189 0.256
Expression system: Escherichia coli

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