Function and Biology

Polymerase Domain from Mycobacterium tuberculosis Ligase D in complex with DNA

Source organisms:
Biochemical function: not assigned
Biological process: not assigned
Cellular component: not assigned

EC 6.5.1.1: DNA ligase (ATP)

Reaction catalysed:
(1a) ATP + [DNA ligase]-L-lysine = [DNA ligase]-N(6)-(5'-adenylyl)-L-lysine + diphosphate
Systematic name:
Poly(deoxyribonucleotide)-3'-hydroxyl:5'-phospho-poly(deoxyribonucleotide) ligase (ATP)
Alternative Name(s):
  • DNA joinase
  • DNA ligase
  • DNA repair enzyme
  • DNA-joining enzyme
  • Deoxyribonucleate ligase
  • Deoxyribonucleic acid joinase
  • Deoxyribonucleic acid ligase
  • Deoxyribonucleic acid repair enzyme
  • Deoxyribonucleic acid-joining enzyme
  • Deoxyribonucleic joinase
  • Deoxyribonucleic ligase
  • Deoxyribonucleic repair enzyme
  • Deoxyribonucleic-joining enzyme
  • Poly(deoxyribonucleotide):poly(deoxyribonucleotide) ligase (AMP-forming)
  • Polydeoxyribonucleotide synthase (ATP)
  • Polynucleotide ligase
  • Polynucleotide ligase (ATP)
  • Sealase

GO terms

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Sequence family

Pfam Protein family (Pfam)
PF21686
Domain description: LigD, primase-polymerase domain
Occurring in:
  1. Multifunctional non-homologous end joining DNA repair protein LigD

InterPro InterPro annotations
IPR033649
Domain description: LigD polymerase domain, MtLigD-type
Occurring in:
  1. Multifunctional non-homologous end joining DNA repair protein LigD
IPR014145
Domain description: DNA ligase D, polymerase domain
Occurring in:
  1. Multifunctional non-homologous end joining DNA repair protein LigD

Structure domain

CATH CATH domain
3.30.70.3300
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: Alpha-Beta Plaits
Homology: Alpha-Beta Plaits
Occurring in:
  1. Multifunctional non-homologous end joining DNA repair protein LigD
The deposited structure of PDB entry 2r9l contains 2 copies of CATH domain 3.30.70.3300 (Alpha-Beta Plaits) in Multifunctional non-homologous end joining DNA repair protein LigD. Showing 1 copy in chain E [auth A].