› 2rpk

Solution NMR

Solution Structure of Domain II of the Positive Polarity CCHMVD Hammerhead Ribozyme

Released:
DOI: 10.2210/pdb2rpk/pdb
PDB entry 2rpk coloured by chain, front view.
PDB entry 2rpk coloured by chain, side view.
PDB entry 2rpk coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Structure-function analysis of the ribozymes of chrysanthemum chlorotic mottle viroid: a loop-loop interaction motif conserved in most natural hammerheads.
Dufour D, de la Peña M, Gago S, Flores R, Gallego J
OpenAccess logo Nucleic Acids Res 37 368-81 (2009)
PMID: 19043070

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196586 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
RNA (5'-R(*GP*GP*GP*AP*UP*CP*CP*AP*UP*GP*AP*CP*AP*GP*GP*AP*UP*CP*CP*C)-3') Chain: A
Molecule details ›
Chain: A
Length: 20 nucleotides
Theoretical weight: 6.42 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: simulated annealing and restrained energy minimization
Expression system: Not provided

Quick links

Citations

7 review citations

The biology of viroid-host interactions.
Ding B. (2009)
6 more

1 mention without citation

Structure-function analysis of the ribozymes of chrysanthemum chlorotic mottle viroid: a loop-loop interaction motif conserved in most natural hammerheads.
Dufour et al. (2009)