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- Relating destabilizing regions to known functional sites in proteins. Dessailly BH, Lensink MF, Wodak SJ. BMC Bioinformatics 8 141 (2007)
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- The dipeptidyl peptidase IV inhibitors vildagliptin and K-579 inhibit a phospholipase C: a case of promiscuous scaffolds in proteins. Chakraborty S, Rendón-Ramírez A, Ásgeirsson B, Dutta M, Ghosh AS, Oda M, Venkatramani R, Rao BJ, Dandekar AM, Goñi FM. F1000Res 2 286 (2013)
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- Eukaryotic Base Excision Repair: New Approaches Shine Light on Mechanism. Beard WA, Horton JK, Prasad R, Wilson SH. Annu Rev Biochem 88 137-162 (2019)
- Envisioning the molecular choreography of DNA base excision repair. Parikh SS, Mol CD, Hosfield DJ, Tainer JA. Curr Opin Struct Biol 9 37-47 (1999)
- Biological properties of single chemical-DNA adducts: a twenty year perspective. Delaney JC, Essigmann JM. Chem Res Toxicol 21 232-252 (2008)
- The cutting edges in DNA repair, licensing, and fidelity: DNA and RNA repair nucleases sculpt DNA to measure twice, cut once. Tsutakawa SE, Lafrance-Vanasse J, Tainer JA. DNA Repair (Amst) 19 95-107 (2014)
- Uracil-DNA glycosylase: Structural, thermodynamic and kinetic aspects of lesion search and recognition. Zharkov DO, Mechetin GV, Nevinsky GA. Mutat Res 685 11-20 (2010)
- Rules of engagement for base excision repair in chromatin. Odell ID, Wallace SS, Pederson DS. J Cell Physiol 228 258-266 (2013)
- The DNA trackwalkers: principles of lesion search and recognition by DNA glycosylases. Zharkov DO, Grollman AP. Mutat Res 577 24-54 (2005)
- DNA repair pathways in trypanosomatids: from DNA repair to drug resistance. Genois MM, Paquet ER, Laffitte MC, Maity R, Rodrigue A, Ouellette M, Masson JY. Microbiol Mol Biol Rev 78 40-73 (2014)
- Protein mimicry of DNA and pathway regulation. Putnam CD, Tainer JA. DNA Repair (Amst) 4 1410-1420 (2005)
- Molecular and enzymatic profiles of mammalian DNA methyltransferases: structures and targets for drugs. Xu F, Mao C, Ding Y, Rui C, Wu L, Shi A, Zhang H, Zhang L, Xu Z. Curr Med Chem 17 4052-4071 (2010)
- DNA deamination in immunity. Petersen-Mahrt S. Immunol Rev 203 80-97 (2005)
- Exposing the MYtH about base excision repair and human inherited disease. Cheadle JP, Sampson JR. Hum Mol Genet 12 Spec No 2 R159-65 (2003)
- Regulation of DNA glycosylases and their role in limiting disease. Sampath H, McCullough AK, Lloyd RS. Free Radic Res 46 460-478 (2012)
- BERing the burden of damage: Pathway crosstalk and posttranslational modification of base excision repair proteins regulate DNA damage management. Limpose KL, Corbett AH, Doetsch PW. DNA Repair (Amst) 56 51-64 (2017)
- Uracil DNA glycosylase: insights from a master catalyst. Stivers JT, Drohat AC. Arch Biochem Biophys 396 1-9 (2001)
- Base excision repair in nucleosome substrates. Jagannathan I, Cole HA, Hayes JJ. Chromosome Res 14 27-37 (2006)
- Facilitation of base excision repair by chromatin remodeling. Hinz JM, Czaja W. DNA Repair (Amst) 36 91-97 (2015)
- Generation, biological consequences and repair mechanisms of cytosine deamination in DNA. Yonekura S, Nakamura N, Yonei S, Zhang-Akiyama QM. J Radiat Res 50 19-26 (2009)
- Base excision and nucleotide excision repair pathways in mycobacteria. Kurthkoti K, Varshney U. Tuberculosis (Edinb) 91 533-543 (2011)
- Aberrant base excision repair pathway of oxidatively damaged DNA: Implications for degenerative diseases. Talhaoui I, Matkarimov BT, Tchenio T, Zharkov DO, Saparbaev MK. Free Radic Biol Med 107 266-277 (2017)
- Base excision repair in chromatin: Insights from reconstituted systems. Balliano AJ, Hayes JJ. DNA Repair (Amst) 36 77-85 (2015)
- New paradigm of functional regulation by DNA mimic proteins: Recent updates. Wang HC, Chou CC, Hsu KC, Lee CH, Wang AH. IUBMB Life 71 539-548 (2019)
- Combining structural and bioinformatics methods for the analysis of functionally important residues in DNA glycosylases. Zharkov DO, Grollman AP. Free Radic Biol Med 32 1254-1263 (2002)
- Initiating base excision repair in chromatin. Kennedy EE, Caffrey PJ, Delaney S. DNA Repair (Amst) 71 87-92 (2018)
- DNA replication to aid somatic hypermutation. Xu Z, Zan H, Pal Z, Casali P. Adv Exp Med Biol 596 111-127 (2007)
- Isoforms of Base Excision Repair Enzymes Produced by Alternative Splicing. Boldinova EO, Khairullin RF, Makarova AV, Zharkov DO. Int J Mol Sci 20 E3279 (2019)
- Poxvirus uracil-DNA glycosylase-An unusual member of the family I uracil-DNA glycosylases. Schormann N, Zhukovskaya N, Bedwell G, Nuth M, Gillilan R, Prevelige PE, Ricciardi RP, Banerjee S, Chattopadhyay D. Protein Sci 25 2113-2131 (2016)
- DNA repair: how MutM finds the needle in a haystack. Jiricny J. Curr Biol 20 R145-7 (2010)
- Conformational dynamics and pre-steady-state kinetics of DNA glycosylases. Fedorova OS, Kuznetsov NA, Koval VV, Knorre DG. Biochemistry (Mosc) 75 1225-1239 (2010)
- The Essential Co-Option of Uracil-DNA Glycosylases by Herpesviruses Invites Novel Antiviral Design. Savva R. Microorganisms 8 E461 (2020)
- The Design and Application of DNA-Editing Enzymes as Base Editors. Rallapalli KL, Komor AC. Annu Rev Biochem 92 43-79 (2023)
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