2vdw

X-ray diffraction
2.7Å resolution

Guanosine N7 methyl-transferase sub-complex (D1-D12) of the vaccinia virus mRNA capping enzyme

Released:

Function and Biology Details

Reactions catalysed:
S-adenosyl-L-methionine + a 5'-(5'-triphosphoguanosine)-[mRNA] = S-adenosyl-L-homocysteine + a 5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA]
GTP + a 5'-diphospho-[mRNA] = diphosphate + a 5'-(5'-triphosphoguanosine)-[mRNA]
A 5'-triphospho-[mRNA] + H(2)O = a 5'-diphospho-[mRNA] + phosphate

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-137587 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
mRNA-capping enzyme catalytic subunit Chains: A, C, E, G
Molecule details ›
Chains: A, C, E, G
Length: 302 amino acids
Theoretical weight: 34.76 KDa
Source organism: Vaccinia virus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P04298 (Residues: 545-844; Coverage: 36%)
Gene names: D1R, OPG113, VACWR106
Sequence domains: mRNA (guanine-N(7))-methyltransferase domain
Structure domains: Vaccinia Virus protein VP39
mRNA-capping enzyme regulatory subunit OPG124 Chains: B, D, F, H
Molecule details ›
Chains: B, D, F, H
Length: 287 amino acids
Theoretical weight: 33.4 KDa
Source organism: Vaccinia virus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P04318 (Residues: 1-287; Coverage: 100%)
Gene names: D12L, OPG124, VACWR117
Sequence domains: Poxvirus mRNA capping enzyme, small subunit
Structure domains: Poxvirus mRNA capping enzyme, small subunit

Ligands and Environments


Cofactor: Ligand SAH 4 x SAH
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P1
Unit cell:
a: 60.89Å b: 61.02Å c: 225.78Å
α: 94.22° β: 92.95° γ: 108.26°
R-values:
R R work R free
0.225 0.223 0.265
Expression system: Escherichia coli BL21(DE3)