2vm4 Citations

Crystallography with online optical and X-ray absorption spectroscopies demonstrates an ordered mechanism in copper nitrite reductase.

J Mol Biol 378 353-61 (2008)
Cited: 39 times
EuropePMC logo PMID: 18353369

Abstract

Nitrite reductases are key enzymes that perform the first committed step in the denitrification process and reduce nitrite to nitric oxide. In copper nitrite reductases, an electron is delivered from the type 1 copper (T1Cu) centre to the type 2 copper (T2Cu) centre where catalysis occurs. Despite significant structural and mechanistic studies, it remains controversial whether the substrates, nitrite, electron and proton are utilised in an ordered or random manner. We have used crystallography, together with online X-ray absorption spectroscopy and optical spectroscopy, to show that X-rays rapidly and selectively photoreduce the T1Cu centre, but that the T2Cu centre does not photoreduce directly over a typical crystallographic data collection time. Furthermore, internal electron transfer between the T1Cu and T2Cu centres does not occur, and the T2Cu centre remains oxidised. These data unambiguously demonstrate an 'ordered' mechanism in which electron transfer is gated by binding of nitrite to the T2Cu. Furthermore, the use of online multiple spectroscopic techniques shows their value in assessing radiation-induced redox changes at different metal sites and demonstrates the importance of ensuring the correct status of redox centres in a crystal structure determination. Here, optical spectroscopy has shown a very high sensitivity for detecting the change in T1Cu redox state, while X-ray absorption spectroscopy has reported on the redox status of the T2Cu site, as this centre has no detectable optical absorption.

Articles - 2vm4 mentioned but not cited (1)

  1. Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography. Halsted TP, Yamashita K, Gopalasingam CC, Shenoy RT, Hirata K, Ago H, Ueno G, Blakeley MP, Eady RR, Antonyuk SV, Yamamoto M, Hasnain SS. IUCrJ 6 761-772 (2019)


Reviews citing this publication (6)

  1. Gating mechanisms for biological electron transfer: integrating structure with biophysics reveals the nature of redox control in cytochrome P450 reductase and copper-dependent nitrite reductase. Leferink NG, Pudney CR, Brenner S, Heyes DJ, Eady RR, Samar Hasnain S, Hay S, Rigby SE, Scrutton NS. FEBS Lett 586 578-584 (2012)
  2. Recent structural insights into the function of copper nitrite reductases. Horrell S, Kekilli D, Strange RW, Hough MA. Metallomics 9 1470-1482 (2017)
  3. Biological X-ray absorption spectroscopy (BioXAS): a valuable tool for the study of trace elements in the life sciences. Strange RW, Feiters MC. Curr Opin Struct Biol 18 609-616 (2008)
  4. Metalloprotein catalysis: structural and mechanistic insights into oxidoreductases from neutron protein crystallography. Schröder GC, Meilleur F. Acta Crystallogr D Struct Biol 77 1251-1269 (2021)
  5. Serial femtosecond crystallography at the SACLA: breakthrough to dynamic structural biology. Mizohata E, Nakane T, Fukuda Y, Nango E, Iwata S. Biophys Rev 10 209-218 (2018)
  6. Tracking electrons in biological macromolecules: from ensemble to single molecule. Tabares LC, Gupta A, Aartsma TJ, Canters GW. Molecules 19 11660-11678 (2014)

Articles citing this publication (32)