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Crystal structure of Glycogen Debranching enzyme TreX from Sulfolobus solfataricus

Source organism: Saccharolobus solfataricus
Biochemical function: hydrolase activity, hydrolyzing O-glycosyl compounds
Biological process: glycogen catabolic process
Cellular component: not assigned

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GO terms

Sequence families

Pfam Protein families (Pfam)
PF00128
Domain description: Alpha amylase, catalytic domain
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
The deposited structure of PDB entry 2vnc contains 2 copies of Pfam domain PF00128 (Alpha amylase, catalytic domain) in Glycosyl hydrolase family 13 catalytic domain-containing protein. Showing 1 copy in chain A.

PF02922
Domain description: Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
The deposited structure of PDB entry 2vnc contains 2 copies of Pfam domain PF02922 (Carbohydrate-binding module 48 (Isoamylase N-terminal domain)) in Glycosyl hydrolase family 13 catalytic domain-containing protein. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR006047
Domain description: Glycosyl hydrolase, family 13, catalytic domain
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
IPR006048
Domain description: Alpha-amylase/branching enzyme, C-terminal all beta
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
IPR013780
Domain description: Glycosyl hydrolase, all-beta
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
IPR017853
Domain description: Glycoside hydrolase superfamily
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
IPR004193
Domain description: Glycoside hydrolase, family 13, N-terminal
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
IPR044505
Domain description: Glycogen debranching enzyme GlgX/isoamylase, N-terminal Early set domain
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
IPR011837
Domain description: Glycogen debranching enzyme, GlgX type
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
IPR014756
Domain description: Immunoglobulin E-set
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
IPR013783
Domain description: Immunoglobulin-like fold
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein

Structure domains

CATH CATH domains
2.60.40.1180
Class: Mainly Beta
Architecture: Sandwich
Topology: Immunoglobulin-like
Homology: Golgi alpha-mannosidase II
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
The deposited structure of PDB entry 2vnc contains 2 copies of CATH domain 2.60.40.1180 (Immunoglobulin-like) in Glycosyl hydrolase family 13 catalytic domain-containing protein. Showing 1 copy in chain A.
3.20.20.80
Class: Alpha Beta
Architecture: Alpha-Beta Barrel
Topology: TIM Barrel
Homology: Glycosidases
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
The deposited structure of PDB entry 2vnc contains 2 copies of CATH domain 3.20.20.80 (TIM Barrel) in Glycosyl hydrolase family 13 catalytic domain-containing protein. Showing 1 copy in chain A.
2.60.40.10
Class: Mainly Beta
Architecture: Sandwich
Topology: Immunoglobulin-like
Homology: Immunoglobulins
Occurring in:
  1. Glycosyl hydrolase family 13 catalytic domain-containing protein
The deposited structure of PDB entry 2vnc contains 2 copies of CATH domain 2.60.40.10 (Immunoglobulin-like) in Glycosyl hydrolase family 13 catalytic domain-containing protein. Showing 1 copy in chain A.

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