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Family 51 carbohydrate binding module from a family 98 glycoside hydrolase produced by Clostridium perfringens in complex with blood group A-trisaccharide ligand.

Source organism: Clostridium perfringens
Biochemical function: not assigned
Biological process: not assigned
Cellular component: not assigned

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GO terms

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Sequence family

Pfam Protein family (Pfam)
PF08305
Domain description: NPCBM/NEW2 domain
Occurring in:
  1. Glycosyl hydrolase family 98 putative carbohydrate-binding module domain-containing protein
The deposited structure of PDB entry 2vng contains 2 copies of Pfam domain PF08305 (NPCBM/NEW2 domain) in Glycosyl hydrolase family 98 putative carbohydrate-binding module domain-containing protein. Showing 1 copy in chain B.

InterPro InterPro annotations
IPR013222
Domain description: Glycosyl hydrolase family 98, putative carbohydrate-binding module
Occurring in:
  1. Glycosyl hydrolase family 98 putative carbohydrate-binding module domain-containing protein
IPR008979
Domain description: Galactose-binding-like domain superfamily
Occurring in:
  1. Glycosyl hydrolase family 98 putative carbohydrate-binding module domain-containing protein
IPR038637
Domain description: NPCBM domain superfamily
Occurring in:
  1. Glycosyl hydrolase family 98 putative carbohydrate-binding module domain-containing protein

Structure domain

CATH CATH domain
2.60.120.1060
Class: Mainly Beta
Architecture: Sandwich
Topology: Jelly Rolls
Homology: NPCBM/NEW2 domain
Occurring in:
  1. Glycosyl hydrolase family 98 putative carbohydrate-binding module domain-containing protein
The deposited structure of PDB entry 2vng contains 2 copies of CATH domain 2.60.120.1060 (Jelly Rolls) in Glycosyl hydrolase family 98 putative carbohydrate-binding module domain-containing protein. Showing 1 copy in chain B.
SCOP SCOP annotation
158966
Class: All beta proteins
Fold: Galactose-binding domain-like
Superfamily: Galactose-binding domain-like
Occurring in:
  1. Glycosyl hydrolase family 98 putative carbohydrate-binding module domain-containing protein
The deposited structure of PDB entry 2vng contains 2 copies of SCOP domain 158966 (NPCBM-like) in Glycosyl hydrolase family 98 putative carbohydrate-binding module domain-containing protein. Showing 1 copy in chain B.

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