› 2vvf

X-ray diffraction
2.5Å resolution

Crystal structure of the major capsid protein P2 from Bacteriophage PM2

Released:
DOI: 10.2210/pdb2vvf/pdb
PDB entry 2vvf coloured by chain, front view.
PDB entry 2vvf coloured by chain, side view.
PDB entry 2vvf coloured by chain, top view.
Source organism: Pseudoalteromonas virus PM2
Primary publication:
Insights into virus evolution and membrane biogenesis from the structure of the marine lipid-containing bacteriophage PM2.
Abrescia NG, Grimes JM, Kivelä HM, Assenberg R, Sutton GC, Butcher SJ, Bamford JK, Bamford DH, Stuart DI
Mol Cell 31 749-61 (2008)
PMID: 18775333

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-147484 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Major capsid protein P2 Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 269 amino acids
Theoretical weight: 30.23 KDa
Source organism: Pseudoalteromonas virus PM2
UniProt:
  • Canonical: P15794 (Residues: 1-269; Coverage: 100%)
Gene name: II
Sequence domains: Viral coat protein P2 N-terminal domain
Structure domains: Jelly Rolls

Ligands and Environments

1 bound ligand:
Ligand CA 6 x CA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE BM14
Spacegroup: P21212
Unit cell:
a: 163.99Å b: 77.57Å c: 127.85Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.241 0.24 0.258

Quick links

Citations

22 review citations

Phage diversity, genomics and phylogeny.
Dion et al. (2020)
21 more

11 mentions without citation

Unraveling virus relationships by structure-based phylogenetic classification.
Ng et al. (2020)
10 more