PDB 2wse experiment details and validation ‹ Protein Data Bank in Europe (PDBe) ‹ EMBL-EBI

X-ray diffraction

Source organisms:

Resolution: 3.49Å

Reported R values:

R R_free R_work

0.36 0.37 0.36

Entry percentile scores

X-ray diffraction

Sample information

Author description:

Improved Model of Plant Photosystem I

Source organisms:

Validation information

Metric	Description
Bond angles in protein, DNA, RNA molecules	111 outlier(s) of 34442 (%)
Bond lengths in protein, DNA, RNA molecules	27 outlier(s) of 25305 (%)
Electron density fit in protein, DNA, RNA molecules	465 outlier(s) of 3133 (%)
Ramachandran outliers in protein molecules	881 outlier(s) of 3091 (%)
Sidechain rotamer outliers in protein molecules	957 outlier(s) of 2542 (%)

Experimental information

X-ray source:

ESRF BEAMLINE ID23-2

Dataset statistics

Metric	Value	Source
Cell dimensions	a: 120.655 Å b: 189.086 Å c: 129.388 Å α: 90° β: 91.24° γ: 90°	Depositor
Number of reflections	66880	Xtriage(Phenix)
Test set size	1.99%	EDS
Data completeness	90.6%	EDS
EDS resolution	3.49Å - 39.96Å	EDS
<I/σ(I)>	2.6	Xtriage(Phenix)
Twinning statistics	<\|L\|> = 0.46 , <L²> = 0.29	Xtriage(Phenix)
Spacegroup	P 1 2₁ 1	Depositor
Possible (pseudo-) translation	The largest off-origin peak in the Patterson function is 3.09% of the height of the origin peak. No significant pseudotranslation is detected.	Xtriage(Phenix)
Wilson B	91 Å²	Xtriage(Phenix)

Refinement statistics

Metric	Value	Source
Refinement software	PHENIX	DCC
Bulk solvent B	114 Å²	EDS
Bulk solvent k	0.19 e^-/Å³	EDS
Fo-Fc correlation	0.708	EDS
R value (DCC)	0.39	DCC
R_free (DCC)	0.41	DCC
R value (EDS)	0.4	EDS

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2wse @ RCSB
2wse @ PDBj
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