2yb1

X-ray diffraction
1.9Å resolution

Structure of an amidohydrolase from Chromobacterium violaceum (EFI target EFI-500202) with bound Mn, AMP and phosphate.

Released:
Model geometry
Fit model/data

Function and Biology Details

Reaction catalysed:
Nucleoside 3',5'-bisphosphate + H(2)O = nucleoside 5'-phosphate + phosphate
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-181848 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
3',5'-nucleoside bisphosphate phosphatase Chain: A
Molecule details ›
Chain: A
Length: 292 amino acids
Theoretical weight: 31.37 KDa
Source organism: Chromobacterium violaceum
Expression system: Escherichia coli
UniProt:
  • Canonical: Q7NXD4 (Residues: 1-285; Coverage: 100%)
Gene name: CV_1693
Sequence domains: PHP domain
Structure domains:

Ligands and Environments

3 bound ligands:
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: RIGAKU RU200
Spacegroup: P212121
Unit cell:
a: 39.958Å b: 46.765Å c: 130.785Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.16 0.158 0.207
Expression system: Escherichia coli