› 2zv3

X-ray diffraction
2.1Å resolution

Crystal structure of project MJ0051 from Methanocaldococcus jannaschii DSM 2661

Released:
DOI: 10.2210/pdb2zv3/pdb
PDB entry 2zv3 coloured by chain, front view.
PDB entry 2zv3 coloured by chain, side view.
PDB entry 2zv3 coloured by chain, top view.
Source organism: Methanocaldococcus jannaschii DSM 2661
Entry authors: Shimizu K, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Reaction catalysed: 
N-substituted aminoacyl-tRNA + H(2)O = N-substituted amino acid + tRNA
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-178774 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptidyl-tRNA hydrolase Chains: A, B, C, D, E, F, G, H, I
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I
Length: 115 amino acids
Theoretical weight: 12.69 KDa
Source organism: Methanocaldococcus jannaschii DSM 2661
UniProt:
  • Canonical: Q60363 (Residues: 1-115; Coverage: 100%)
Gene names: MJ0051, pth, pth2
Sequence domains: Peptidyl-tRNA hydrolase PTH2
Structure domains: Bit1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PAL/PLS BEAMLINE 4A
Spacegroup: C2
Unit cell:
a: 149.85Å b: 70.79Å c: 96.01Å
α: 90° β: 121.67° γ: 90°
R-values:
R R work R free
0.218 0.218 0.263

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