› 3ab6

X-ray diffraction
1.78Å resolution

Crystal structure of NAG3 bound lysozyme from Meretrix lusoria

Released:
DOI: 10.2210/pdb3ab6/pdb
PDB entry 3ab6 coloured by chain, front view.
PDB entry 3ab6 coloured by chain, side view.
PDB entry 3ab6 coloured by chain, top view.
Source organism: Meretrix lusoria
Primary publication:
The tertiary structure of an i-type lysozyme isolated from the common orient clam (Meretrix lusoria).
Kuwano Y, Yoneda K, Kawaguchi Y, Araki T
Acta Crystallogr Sect F Struct Biol Cryst Commun 69 1202-6 (2013)
PMID: 24192349

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-551401 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Lysozyme Chain: A
Molecule details ›
Chain: A
Length: 122 amino acids
Theoretical weight: 13.38 KDa
Source organism: Meretrix lusoria
UniProt:
  • Canonical: P86383 (Residues: 1-122; Coverage: 100%)
Sequence domains: Destabilase
Structure domains: Lysozyme

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-17A
Spacegroup: P43212
Unit cell:
a: 41.61Å b: 41.61Å c: 123.208Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.202 0.202 0.225

Quick links

Citations

3 citation in other articles

The Anti-sigma Factor RsiV Is a Bacterial Receptor for Lysozyme: Co-crystal Structure Determination and Demonstration That Binding of Lysozyme to RsiV Is Required for σV Activation.
Hastie et al. (2016)
2 more

5 mentions without citation

Recent Developments of Photodeformable Polymers: From Materials to Applications.
Kong et al. (2023)
4 more