› 3s8l

X-ray diffraction
1.71Å resolution

Protein-Ligand Interactions: Thermodynamic Effects Associated with Increasing Hydrophobic Surface Area

Released:
DOI: 10.2210/pdb3s8l/pdb
PDB entry 3s8l coloured by chain, front view.
PDB entry 3s8l coloured by chain, side view.
PDB entry 3s8l coloured by chain, top view.
Source organisms:
Primary publication:
Protein-ligand interactions: thermodynamic effects associated with increasing nonpolar surface area.
Myslinski JM, DeLorbe JE, Clements JH, Martin SF
J Am Chem Soc 133 18518-21 (2011)
PMID: 22007755

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-158864 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Growth factor receptor-bound protein 2 Chain: A
Molecule details ›
Chain: A
Length: 117 amino acids
Theoretical weight: 13.76 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
pYAc4cN Chain: B
Molecule details ›
Chain: B
Length: 5 amino acids
Theoretical weight: 496 Da
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

2 bound ligands:
Ligand CL 1 x CL
Ligand GOL 1 x GOL
1 modified residue:
Ligand PTR 1 x PTR

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: P43212
Unit cell:
a: 42.072Å b: 42.072Å c: 108.755Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.199 0.196 0.256
Expression systems:
  • Escherichia coli
  • Not provided

Quick links

Citations

2 review citations

Correlating structure and energetics in protein-ligand interactions: paradigms and paradoxes.
Martin et al. (2013)
1 more