3tiw

X-ray diffraction
1.8Å resolution

Crystal structure of p97N in complex with the C-terminus of gp78

Released:

Function and Biology Details

Reactions catalysed:
ATP + H(2)O = ADP + phosphate
[E2 ubiquitin-conjugating enzyme]-S-ubiquitinyl-L-cysteine + [acceptor protein]-L-cysteine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-S-ubiquitinyl-L-cysteine
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-157176 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Transitional endoplasmic reticulum ATPase Chains: A, B
Molecule details ›
Chains: A, B
Length: 187 amino acids
Theoretical weight: 21.07 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: P55072 (Residues: 1-187; Coverage: 23%)
Gene names: HEL-220, HEL-S-70, VCP
Sequence domains:
Structure domains:
E3 ubiquitin-protein ligase AMFR Chains: C, D
Molecule details ›
Chains: C, D
Length: 19 amino acids
Theoretical weight: 2.27 KDa
Source organism: Homo sapiens
Expression system: Not provided
UniProt:
  • Canonical: Q9UKV5 (Residues: 622-640; Coverage: 3%)
Gene names: AMFR, RNF45

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: BESSY BEAMLINE 14.1
Spacegroup: P32
Unit cell:
a: 70.24Å b: 70.24Å c: 74.82Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.148 0.147 0.17
Expression systems:
  • Escherichia coli
  • Not provided