3v8v

X-ray diffraction
2.6Å resolution

Crystal structure of bifunctional methyltransferase YcbY (RlmLK) from Escherichia coli, SAM binding

Released:

Function and Biology Details

Reactions catalysed:
S-adenosyl-L-methionine + guanine(2445) in 23S rRNA = S-adenosyl-L-homocysteine + N(2)-methylguanine(2445) in 23S rRNA
S-adenosyl-L-methionine + guanine(2069) in 23S rRNA = S-adenosyl-L-homocysteine + N(7)-methylguanine(2069) in 23S rRNA
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
monomeric (preferred)
PDBe Complex ID:
PDB-CPX-160015 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Ribosomal RNA large subunit methyltransferase K/L Chains: A, B
Molecule details ›
Chains: A, B
Length: 702 amino acids
Theoretical weight: 78.96 KDa
Source organism: Escherichia coli K-12
Expression system: Escherichia coli
UniProt:
  • Canonical: P75864 (Residues: 1-702; Coverage: 100%)
Gene names: JW0931, b0948, rlmK, rlmKL, rlmL, ycbY
Sequence domains:
Structure domains:

Ligands and Environments


Cofactor: Ligand SAM 4 x SAM
Carbohydrate polymer : NEW Components: GLC, TRV
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRF BEAMLINE BL17U
Spacegroup: P21
Unit cell:
a: 73.724Å b: 140.586Å c: 102.097Å
α: 90° β: 101.88° γ: 90°
R-values:
R R work R free
0.185 0.182 0.247
Expression system: Escherichia coli