GO terms
Biochemical function:
Biological process:
Cellular component:
Sequence families
Protein families (Pfam)
RNA families (Rfam)
InterPro annotations
IPR005485
Domain description:
Large ribosomal subunit protein uL18 eukaryotic/archaeal
Occurring in:
Occurring in:
IPR036789
Domain description:
Large ribosomal subunit protein uL6-like, alpha-beta domain superfamily
Occurring in:
Occurring in:
IPR005721
Domain description:
Large ribosomal subunit protein uL22, eukaryotic/archaeal
Occurring in:
Occurring in:
IPR036919
Domain description:
Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily
Occurring in:
Occurring in:
IPR000988
Domain description:
Large ribosomal subunit protein eL24-related, N-terminal
Occurring in:
Occurring in:
IPR005756
Domain description:
Large ribosomal subunit protein uL24, eukaryotic/archaeal
Occurring in:
Occurring in:
IPR012678
Domain description:
Ribosomal protein uL23/eL15/eS24 core domain superfamily
Occurring in:
Occurring in:
IPR036769
Domain description:
Large ribosomal subunit protein uL11, C-terminal domain superfamily
Occurring in:
Occurring in:
IPR036796
Domain description:
Large ribosomal subunit protein uL11, N-terminal domain superfamily
Occurring in:
Occurring in:
IPR001197
Domain description:
Large ribosomal subunit protein uL16, eukaryotes/archaea
Occurring in:
Occurring in:
IPR043141
Domain description:
Large ribosomal subunit protein uL10-like domain superfamily
Occurring in:
Occurring in:
IPR010995
Domain description:
DNA repair Rad51/transcription factor NusA, alpha-helical
Occurring in:
Occurring in:
IPR016082
Domain description:
Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain
Occurring in:
Occurring in:
IPR035808
Domain description:
Large ribosomal subunit protein uL30, eukaryotic/archaeal
Occurring in:
Occurring in:
IPR024794
Domain description:
Large ribosomal subunit protein eL15 core domain superfamily
Occurring in:
Occurring in:
IPR005755
Domain description:
Large ribosomal subunit protein uL13, eukaryotic/archaeal
Occurring in:
Occurring in:
IPR018255
Domain description:
Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaea
Occurring in:
Occurring in:
IPR040637
Domain description:
Large ribosomal subunit protein uL10-like, insertion domain
Occurring in:
Occurring in:
IPR043164
Domain description:
Large ribosomal subunit protein uL10-like, insertion domain superfamily
Occurring in:
Occurring in:
IPR004037
Domain description:
Large ribosomal subunit protein eL8-like, conserved site
Occurring in:
Occurring in:
IPR013000
Domain description:
Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved site
Occurring in:
Occurring in:
IPR045240
Domain description:
Large ribosomal subunit protein uL4, eukaryotic and archaeal type
Occurring in:
Occurring in:
IPR045077
Domain description:
Large ribosomal subunit protein uL3, archaeal/eukaryotic-type
Occurring in:
Occurring in:
IPR044892
Domain description:
Ribosomal protein L3, domain 3, archaeal-type superfamily
Occurring in:
Occurring in:
Structure domains
CATH domains
2.40.30.10
Class:
Mainly Beta
Architecture:
Beta Barrel
Topology:
Elongation Factor Tu (Ef-tu); domain 3
Homology:
Translation factors
Occurring in:

3.30.1390.20
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Ribosomal Protein L30; Chain: A,
Homology:
Ribosomal protein L30, ferredoxin-like fold domain
Occurring in:

3.100.10.10
Class:
Alpha Beta
Architecture:
Ribosomal Protein L15; Chain: K; domain 2
Topology:
Ribosomal Protein L15; Chain: K; domain 2
Homology:
Ribosomal Protein L15; Chain: K; domain 2
Occurring in:


3.90.930.12
Class:
Alpha Beta
Architecture:
Alpha-Beta Complex
Topology:
Outer Surface Protein A; domain 3
Homology:
Ribosomal protein L6, alpha-beta domain
Occurring in:

4.10.960.10
Class:
Few Secondary Structures
Architecture:
Irregular
Topology:
Ribosomal protein L3; domain 3
Homology:
Ribosomal protein L3, domain 3
Occurring in:

2.30.30.30
Class:
Mainly Beta
Architecture:
Roll
Topology:
SH3 type barrels.
Homology:
SH3 type barrels.
Occurring in:


2.20.25.30
Class:
Mainly Beta
Architecture:
Single Sheet
Topology:
N-terminal domain of TfIIb
Homology:
N-terminal domain of TfIIb
Occurring in:

![The deposited structure of PDB entry <span class='highlight'>3ccs</span> contains 1 copy of CATH domain <span class='highlight'>2.20.25.30 (N-terminal domain of TfIIb)</span> in <span class='highlight'>Large ribosomal subunit protein eL37</span>. Showing 1 copy in chain <span class='highlight'>AA [auth 1]</span>. The deposited structure of PDB entry 3ccs contains 1 copy of CATH domain 2.20.25.30 (N-terminal domain of TfIIb) in Large ribosomal subunit protein eL37. Showing 1 copy in chain AA [auth 1].](https://www.ebi.ac.uk/pdbe/static/entry/3ccs_27_1_CATH_2.20.25.30_image-200x200.png)
3.10.440.10
Class:
Alpha Beta
Architecture:
Roll
Topology:
Ribosomal Protein L31e; Chain: W;
Homology:
Ribosomal Protein L31e; Chain: W;
Occurring in:

1.10.15.30
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
3-methyladenine DNA Glycosylase II; Chain A, domain 3
Homology:
3-methyladenine DNA Glycosylase II; Chain A, domain 3
Occurring in:

1.10.287.310
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
Helix Hairpins
Homology:
Helix Hairpins
Occurring in:

2.30.170.20
Class:
Mainly Beta
Architecture:
Roll
Topology:
Ribosomal Protein L24e; Chain: T;
Homology:
Ribosomal protein L24e
Occurring in:

3.30.70.330
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Alpha-Beta Plaits
Homology:
Alpha-Beta Plaits
Occurring in:

3.90.470.10
Class:
Alpha Beta
Architecture:
Alpha-Beta Complex
Topology:
Ribosomal Protein L22; Chain A
Homology:
Ribosomal protein L22/L17
Occurring in:

2.30.30.70
Class:
Mainly Beta
Architecture:
Roll
Topology:
SH3 type barrels.
Homology:
Ribosomal protein L21
Occurring in:

1.10.1200.60
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Homology:
Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A
Occurring in:

1.20.5.560
Class:
Mainly Alpha
Architecture:
Up-down Bundle
Topology:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
Homology:
Single Heli x bin
Occurring in:

1.10.1650.10
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
50s Ribosomal Protein L19e, Chain O, domain 1
Homology:
50s Ribosomal Protein L19e, Chain O, domain 1
Occurring in:

3.30.420.100
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Nucleotidyltransferase; domain 5
Homology:
Nucleotidyltransferase; domain 5
Occurring in:

3.40.1120.10
Class:
Alpha Beta
Architecture:
3-Layer(aba) Sandwich
Topology:
Ribosomal protein L15e
Homology:
Ribosomal protein l15e
Occurring in:

4.10.990.10
Class:
Few Secondary Structures
Architecture:
Irregular
Topology:
Molecule: Ribosomal Protein L15; Chain: K; domain 1
Homology:
Molecule: Ribosomal Protein L15; Chain: K; domain 1
Occurring in:

2.40.150.20
Class:
Mainly Beta
Architecture:
Beta Barrel
Topology:
Ribosomal Protein L14
Homology:
Ribosomal protein L14
Occurring in:

3.90.1180.10
Class:
Alpha Beta
Architecture:
Alpha-Beta Complex
Topology:
Ribosomal Protein L13p; Chain: A;
Homology:
Ribosomal protein L13
Occurring in:

1.10.10.250
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
Arc Repressor Mutant, subunit A
Homology:
Ribosomal protein L11, C-terminal domain
Occurring in:

3.90.1170.10
Class:
Alpha Beta
Architecture:
Alpha-Beta Complex
Topology:
Aldehyde Oxidoreductase; domain 3
Homology:
Ribosomal protein L10e/L16
Occurring in:

3.30.1330.30
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
60s Ribosomal Protein L30; Chain: A;
Homology:
60s Ribosomal Protein L30; Chain: A;
Occurring in:

3.30.1440.10
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
50s Ribosomal Protein L5; Chain: A,
Homology:
50s Ribosomal Protein L5; Chain: A,
Occurring in:

3.40.1370.10
Class:
Alpha Beta
Architecture:
3-Layer(aba) Sandwich
Topology:
Ribosomal Protein L4; Chain: A;
Homology:
Ribosomal Protein L4; Chain: A;
Occurring in:

3.30.1430.10
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Ribosomal Protein L3; Chain: B; domain 2,
Homology:
Ribosomal Protein L3; Chain: B; domain 2,
Occurring in:

4.10.950.10
Class:
Few Secondary Structures
Architecture:
Irregular
Topology:
Ribosomal protein L2; domain 3
Homology:
Ribosomal protein L2, domain 3
Occurring in:

2.40.50.140
Class:
Mainly Beta
Architecture:
Beta Barrel
Topology:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homology:
Nucleic acid-binding proteins
Occurring in:

3.10.450.80
Class:
Alpha Beta
Architecture:
Roll
Topology:
Nuclear Transport Factor 2; Chain: A,
Homology:
Nuclear Transport Factor 2; Chain: A,
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>3ccs</span> contains 1 copy of CATH domain <span class='highlight'>3.10.450.80 (Nuclear Transport Factor 2; Chain: A,)</span> in <span class='highlight'>Large ribosomal subunit protein eL42</span>. Showing 1 copy in chain <span class='highlight'>CA [auth 3]</span>. The deposited structure of PDB entry 3ccs contains 1 copy of CATH domain 3.10.450.80 (Nuclear Transport Factor 2; Chain: A,) in Large ribosomal subunit protein eL42. Showing 1 copy in chain CA [auth 3].](https://www.ebi.ac.uk/pdbe/static/entry/3ccs_29_3_CATH_3.10.450.80_image-200x200.png)
SCOP annotations
58124
Class:
Low resolution protein structures
Fold:
Ribosome and ribosomal fragments
Superfamily:
Ribosome and ribosomal fragments
Occurring in:
- Large ribosomal subunit protein eL37
- Large ribosomal subunit protein eL42
- Large ribosomal subunit protein uL5
- Large ribosomal subunit protein uL13
- Large ribosomal subunit protein uL14
- Large ribosomal subunit protein uL15
- Large ribosomal subunit protein uL18
- Large ribosomal subunit protein eL18
- Large ribosomal subunit protein eL21
- Large ribosomal subunit protein uL24
- Large ribosomal subunit protein eL24
- Large ribosomal subunit protein uL29
- Large ribosomal subunit protein uL30
- Large ribosomal subunit protein eL31












![The deposited structure of PDB entry <span class='highlight'>3ccs</span> contains 1 copy of SCOP domain <span class='highlight'>58124 (Large subunit)</span> in <span class='highlight'>Large ribosomal subunit protein eL37</span>. Showing 1 copy in chain <span class='highlight'>AA [auth 1]</span>. The deposited structure of PDB entry 3ccs contains 1 copy of SCOP domain 58124 (Large subunit) in Large ribosomal subunit protein eL37. Showing 1 copy in chain AA [auth 1].](https://www.ebi.ac.uk/pdbe/static/entry/3ccs_27_1_SCOP_58124_image-200x200.png)
![The deposited structure of PDB entry <span class='highlight'>3ccs</span> contains 1 copy of SCOP domain <span class='highlight'>58124 (Large subunit)</span> in <span class='highlight'>Large ribosomal subunit protein eL42</span>. Showing 1 copy in chain <span class='highlight'>CA [auth 3]</span>. The deposited structure of PDB entry 3ccs contains 1 copy of SCOP domain 58124 (Large subunit) in Large ribosomal subunit protein eL42. Showing 1 copy in chain CA [auth 3].](https://www.ebi.ac.uk/pdbe/static/entry/3ccs_29_3_SCOP_58124_image-200x200.png)
57830
Class:
Small proteins
Fold:
Rubredoxin-like
Superfamily:
Zn-binding ribosomal proteins
Occurring in:

52043
Class:
Alpha and beta proteins (a/b)
Fold:
Barstar-like
Superfamily:
Ribosomal protein L32e
Occurring in:

54190
Class:
Alpha and beta proteins (a+b)
Fold:
Ribosomal proteins S24e, L23 and L15e
Superfamily:
Ribosomal proteins S24e, L23 and L15e
Occurring in:

54844
Class:
Alpha and beta proteins (a+b)
Fold:
Ribosomal protein L22
Superfamily:
Ribosomal protein L22
Occurring in:

48141
Class:
All alpha proteins
Fold:
Ribosomal protein L19 (L19e)
Superfamily:
Ribosomal protein L19 (L19e)
Occurring in:

46907
Class:
All alpha proteins
Fold:
DNA/RNA-binding 3-helical bundle
Superfamily:
Ribosomal protein L11, C-terminal domain
Occurring in:

54687
Class:
Alpha and beta proteins (a+b)
Fold:
alpha/beta-Hammerhead
Superfamily:
Ribosomal protein L16p/L10e
Occurring in:

55316
Class:
Alpha and beta proteins (a+b)
Fold:
Bacillus chorismate mutase-like
Superfamily:
L30e-like
Occurring in:

50461
Class:
All beta proteins
Fold:
Reductase/isomerase/elongation factor common domain
Superfamily:
Translation proteins
Occurring in:

48663
Class:
All alpha proteins
Fold:
Non-globular all-alpha subunits of globular proteins
Superfamily:
Ribosomal protein L39e
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>3ccs</span> contains 1 copy of SCOP domain <span class='highlight'>48663 (Ribosomal protein L39e)</span> in <span class='highlight'>Large ribosomal subunit protein eL39</span>. Showing 1 copy in chain <span class='highlight'>BA [auth 2]</span>. The deposited structure of PDB entry 3ccs contains 1 copy of SCOP domain 48663 (Ribosomal protein L39e) in Large ribosomal subunit protein eL39. Showing 1 copy in chain BA [auth 2].](https://www.ebi.ac.uk/pdbe/static/entry/3ccs_28_2_SCOP_48663_image-200x200.png)