› 3cyz

X-ray diffraction
1.8Å resolution

Dimeric crystal structure of a pheromone binding protein from Apis mellifera in complex with 9-keto-2(E)-decenoic acid at pH 7.0

Released:
DOI: 10.2210/pdb3cyz/pdb
PDB entry 3cyz coloured by chain, front view.
PDB entry 3cyz coloured by chain, side view.
PDB entry 3cyz coloured by chain, top view.
Source organism: Apis mellifera
Primary publication:
Queen bee pheromone binding protein pH-induced domain swapping favors pheromone release.
Pesenti ME, Spinelli S, Bezirard V, Briand L, Pernollet JC, Campanacci V, Tegoni M, Cambillau C
J Mol Biol 390 981-90 (2009)
PMID: 19481550

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-193638 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Pheromone-binding protein ASP1 Chains: A, B
Molecule details ›
Chains: A, B
Length: 119 amino acids
Theoretical weight: 13.19 KDa
Source organism: Apis mellifera
Expression system: Komagataella pastoris
UniProt:
  • Canonical: Q9U9J6 (Residues: 26-144; Coverage: 100%)
Sequence domains: PBP/GOBP family
Structure domains: Pheromone/general odorant binding protein domain

Ligands and Environments

4 bound ligands:
Ligand 9OD 3 x 9OD
Ligand CL 4 x CL
Ligand MG 1 x MG
Ligand GOL 2 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P212121
Unit cell:
a: 36.285Å b: 75.555Å c: 84.113Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.164 0.162 0.2
Expression system: Komagataella pastoris

Quick links

Citations

3 review citations

A look inside odorant-binding proteins in insect chemoreception.
Brito et al. (2016)
2 more