› 3e6a

X-ray diffraction
3.77Å resolution

Crystal structure and Functional Analysis of Glyceraldehyde-3-phosphate Dehydrogenase from Oryza Sativa

Released:
DOI: 10.2210/pdb3e6a/pdb
PDB entry 3e6a coloured by chain, front view.
PDB entry 3e6a coloured by chain, side view.
PDB entry 3e6a coloured by chain, top view.
Source organism: Oryza sativa Japonica Group
Entry authors: Tien YC, Lin YH, Chang SL, Chen CJ

Function and Biology Details

Reaction catalysed: 
D-glyceraldehyde 3-phosphate + phosphate + NAD(+) = 3-phospho-D-glyceroyl phosphate + NADH
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-170970 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Glyceraldehyde-3-phosphate dehydrogenase 1, cytosolic Chains: A, B, C, O
Molecule details ›
Chains: A, B, C, O
Length: 336 amino acids
Theoretical weight: 36.33 KDa
Source organism: Oryza sativa Japonica Group
Expression system: Escherichia coli
UniProt:
  • Canonical: Q0J8A4 (Residues: 2-337; Coverage: 100%)
Gene names: GAPC, GAPC1, GAPDH, GPC, LOC_Os08g03290, OJ1163_G08.15, Os08g0126300, OsJ_024858
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand SO4 8 x SO4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL12B2
Spacegroup: P21
Unit cell:
a: 76.258Å b: 127.418Å c: 77.385Å
α: 90° β: 118.05° γ: 90°
R-values:
R R work R free
0.196 0.196 0.21
Expression system: Escherichia coli

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