› 3fm4

X-ray diffraction
2.11Å resolution

Crystal Structure Analysis of Fungal Versatile Peroxidase from Pleurotus eryngii

Released:
DOI: 10.2210/pdb3fm4/pdb
PDB entry 3fm4 coloured by chain, front view.
PDB entry 3fm4 coloured by chain, side view.
PDB entry 3fm4 coloured by chain, top view.
Source organism: Pleurotus eryngii
Entry authors: Piontek K, Martinez AT, Choinowski T, Plattner DA

Function and Biology Details

Reaction catalysed: 
1-(4-hydroxy-3-methoxyphenyl)-2-(2-methoxyphenoxy)propane-1,3-diol + H(2)O(2) = 4-hydroxy-3-methoxybenzaldehyde + 2-methoxyphenol + glycolaldehyde + H(2)O
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-131734 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Versatile peroxidase VPL2 Chain: A
Molecule details ›
Chain: A
Length: 331 amino acids
Theoretical weight: 34.56 KDa
Source organism: Pleurotus eryngii
Expression system: Escherichia coli
UniProt:
  • Canonical: O94753 (Residues: 31-361; Coverage: 98%)
Gene name: vpl2
Sequence domains:
Structure domains:

Ligands and Environments


Cofactor: Ligand HEM 1 x HEM
4 bound ligands:
Ligand CA 2 x CA
Ligand ZN 6 x ZN
Ligand FE 2 x FE
Ligand CAC 2 x CAC
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: EMBL/DESY, HAMBURG BEAMLINE X11
Spacegroup: P43
Unit cell:
a: 62.794Å b: 62.794Å c: 97.875Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.144 0.141 0.198
Expression system: Escherichia coli

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