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Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1

Source organism: Oryctolagus cuniculus
Biochemical function: structural constituent of ribosome
Biological process: translation
Cellular component: ribosome

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GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein family (Pfam)
PF00687
Domain description: Ribosomal protein L1p/L10e family
Occurring in:
  1. Large ribosomal subunit protein uL1A
The deposited structure of PDB entry 3j0p contains 1 copy of Pfam domain PF00687 (Ribosomal protein L1p/L10e family) in Large ribosomal subunit protein uL1A. Showing 1 copy in chain N [auth B].

Rfam RNA families (Rfam)
RF02543
Domain description: Eukaryotic large subunit ribosomal RNA
Occurring in:
  1. 60S ribosomal RNA fragment
  2. 60S ribosomal RNA fragment
The deposited structure of PDB entry 3j0p contains 1 copy of Rfam domain RF02543 (Eukaryotic large subunit ribosomal RNA) in 60S ribosomal RNA fragment. Showing 1 copy in chain K [auth 2].
The deposited structure of PDB entry 3j0p contains 1 copy of Rfam domain RF02543 (Eukaryotic large subunit ribosomal RNA) in 60S ribosomal RNA fragment. Showing 1 copy in chain M [auth 7].

RF00005
Domain description: tRNA
Occurring in:
  1. tRNA
  2. tRNA
The deposited structure of PDB entry 3j0p contains 1 copy of Rfam domain RF00005 (tRNA) in tRNA. Showing 1 copy in chain Q [auth W].
The deposited structure of PDB entry 3j0p contains 1 copy of Rfam domain RF00005 (tRNA) in tRNA. Showing 1 copy in chain O [auth Y].

RF01960
Domain description: Eukaryotic small subunit ribosomal RNA
Occurring in:
  1. 40S ribosomal RNA fragment
The deposited structure of PDB entry 3j0p contains 1 copy of Rfam domain RF01960 (Eukaryotic small subunit ribosomal RNA) in 40S ribosomal RNA fragment. Showing 1 copy in chain G [auth h].

InterPro InterPro annotations
IPR002222
Domain description: Small ribosomal subunit protein uS19
Occurring in:
  1. Ribosomal protein S15
IPR006032
Domain description: Small ribosomal subunit protein uS12
Occurring in:
  1. Ribosomal protein S23
IPR023575
Domain description: Small ribosomal subunit protein uS19, superfamily
Occurring in:
  1. Ribosomal protein S15
IPR012340
Domain description: Nucleic acid-binding, OB-fold
Occurring in:
  1. Ribosomal protein S23
IPR005680
Domain description: Small ribosomal subunit protein uS12, eukaryotic/archaeal
Occurring in:
  1. Ribosomal protein S23
IPR028364
Domain description: Ribosomal protein uL1/ribosomal biogenesis protein
Occurring in:
  1. Large ribosomal subunit protein uL1A
IPR006846
Domain description: Small ribosomal subunit protein eS30
Occurring in:
  1. Ribosomal protein S30
IPR020934
Domain description: Small ribosomal subunit protein uS19, conserved site
Occurring in:
  1. Ribosomal protein S15
IPR023673
Domain description: Large ribosomal subunit protein uL1, conserved site
Occurring in:
  1. Large ribosomal subunit protein uL1A
IPR016095
Domain description: Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domain
Occurring in:
  1. Large ribosomal subunit protein uL1A
IPR023674
Domain description: Ribosomal protein uL1-like
Occurring in:
  1. Large ribosomal subunit protein uL1A
IPR002143
Domain description: Large ribosomal subunit protein uL1
Occurring in:
  1. Large ribosomal subunit protein uL1A

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