› 3j9e

Electron Microscopy
3.3Å resolution

Atomic structure of a non-enveloped virus reveals pH sensors for a coordinated process of cell entry

Released:
DOI: 10.2210/pdb3j9e/pdb
PDB entry 3j9e coloured by chain, front view.
PDB entry 3j9e coloured by chain, side view.
PDB entry 3j9e coloured by chain, top view.
Source organism: Bluetongue virus 1
Primary publication:
Atomic model of a nonenveloped virus reveals pH sensors for a coordinated process of cell entry.
Zhang X, Patel A, Celma CC, Yu X, Roy P, Zhou ZH
Nat Struct Mol Biol 23 74-80 (2016)
PMID: 26641711
Related structures: EMD-6240

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-125617 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Outer capsid protein VP5 Chain: D
Molecule details ›
Chain: D
Length: 526 amino acids
Theoretical weight: 59.07 KDa
Source organism: Bluetongue virus 1
UniProt:
  • Canonical: K7QP12 (Residues: 1-526; Coverage: 100%)
Sequence domains: Orbivirus outer capsid protein VP5

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.3Å
Relevant EMDB volumes: EMD-6240

Quick links

Citations

8 review citations

Bluetongue virus structure and assembly.
Roy P. (2017)
7 more

6 mentions without citation

New tools for the analysis and validation of cryo-EM maps and atomic models.
Afonine et al. (2018)
5 more