› 3k1z

X-ray diffraction
1.55Å resolution

Crystal Structure of Human Haloacid Dehalogenase-like Hydrolase Domain containing 3 (HDHD3)

Released:
DOI: 10.2210/pdb3k1z/pdb
PDB entry 3k1z coloured by chain, front view.
PDB entry 3k1z coloured by chain, side view.
PDB entry 3k1z coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Ugochukwu E, Guo K, Yue WW, Pilka E, Picaud S, Muniz J, Pike ACW, Krojer T, Gomes M, von Delft F, Bountra C, Arrowsmith CH, Weigelt J, Edwards A, Kavanagh K, Oppermann U, Structural Genomics Consortium (SGC)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189707 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Haloacid dehalogenase-like hydrolase domain-containing protein 3 Chain: A
Molecule details ›
Chain: A
Length: 263 amino acids
Theoretical weight: 29.87 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9BSH5 (Residues: 8-247; Coverage: 96%)
Gene names: C9orf158, HDHD3
Sequence domains: haloacid dehalogenase-like hydrolase
Structure domains:

Ligands and Environments

2 bound ligands:
Ligand EDO 1 x EDO
Ligand GOL 1 x GOL
1 modified residue:
Ligand MSE 3 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: P212121
Unit cell:
a: 51.625Å b: 62.455Å c: 79.665Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.169 0.167 0.207
Expression system: Escherichia coli

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