› 3kjj

X-ray diffraction
1.9Å resolution

Crystal structure of NMB1025, a member of YjgF protein family, from Neisseria meningitidis (hexagonal crystal form)

Released:
DOI: 10.2210/pdb3kjj/pdb
PDB entry 3kjj coloured by chain, front view.
PDB entry 3kjj coloured by chain, side view.
PDB entry 3kjj coloured by chain, top view.
Source organism: Neisseria meningitidis serogroup B
Entry authors: Ren J, Sainsbury S, Owens RJ, Oxford Protein Production Facility (OPPF)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-191710 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
NMB1025 protein Chains: A, B, C, D, E, F, G, H, I, J, K, L
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L
Length: 128 amino acids
Theoretical weight: 14.43 KDa
Source organism: Neisseria meningitidis serogroup B
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9JZJ4 (Residues: 1-120; Coverage: 100%)
Gene name: NMB1025
Sequence domains: Endoribonuclease L-PSP
Structure domains: RutC-like

Ligands and Environments

1 bound ligand:
Ligand GOL 2 x GOL
1 modified residue:
Ligand MSE 60 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE BM14
Spacegroup: P63
Unit cell:
a: 155.613Å b: 155.613Å c: 116.189Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.168 0.166 0.206
Expression system: Escherichia coli

Quick links