› 3ljy

X-ray diffraction
2.41Å resolution

Crystal structure of putative adhesin (YP_001304413.1) from Parabacteroides distasonis ATCC 8503 at 2.41 A resolution

Released:
DOI: 10.2210/pdb3ljy/pdb
PDB entry 3ljy coloured by chain, front view.
PDB entry 3ljy coloured by chain, side view.
PDB entry 3ljy coloured by chain, top view.
Source organism: Parabacteroides distasonis ATCC 8503
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-107953 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative auto-transporter adhesin head GIN domain-containing protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 243 amino acids
Theoretical weight: 26.01 KDa
Source organism: Parabacteroides distasonis ATCC 8503
Expression system: Escherichia coli
UniProt:
  • Canonical: A6LGH7 (Residues: 21-262; Coverage: 100%)
Gene name: BDI_3085
Sequence domains: Putative auto-transporter adhesin, head GIN domain
Structure domains: Pectate Lyase C-like

Ligands and Environments

3 bound ligands:
Ligand PEG 4 x PEG
Ligand CL 1 x CL
Ligand PGE 1 x PGE
1 modified residue:
Ligand MSE 6 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: P2
Unit cell:
a: 65.951Å b: 55.33Å c: 120.613Å
α: 90° β: 105.4° γ: 90°
R-values:
R R work R free
0.191 0.189 0.225
Expression system: Escherichia coli

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