› 3lyb

X-ray diffraction
2.66Å resolution

Structure of putative endoribonuclease(KP1_3112) from Klebsiella pneumoniae

Released:
DOI: 10.2210/pdb3lyb/pdb
PDB entry 3lyb coloured by chain, front view.
PDB entry 3lyb coloured by chain, side view.
PDB entry 3lyb coloured by chain, top view.
Source organism: Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Entry authors: Ramagopal UA, Toro R, Burley SK, Almo SC, New York SGX Research Center for Structural Genomics (NYSGXRC)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assemblies composition:
homo dodecamer
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-163766 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative endoribonuclease Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 165 amino acids
Theoretical weight: 18.43 KDa
Source organism: Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044
Expression system: Escherichia coli BL21(DE3)
Structure domains: RutC-like

Ligands and Environments

1 bound ligand:
Ligand CA 4 x CA
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X29A
Spacegroup: I23
Unit cell:
a: 166.557Å b: 166.557Å c: 166.557Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.195 0.193 0.248
Expression system: Escherichia coli BL21(DE3)

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