1 bound ligand:
GOL 142(C)
Environment details ›
Jmol._Canvas2D (Jmol) "_PDBE_JMOL"[x]
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/package.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/core.z.js
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Jmol JavaScript applet _PDBE_JMOL__462189266911571__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript true
AppletRegistry.checkIn(_PDBE_JMOL__462189266911571__)
vwrOptions:
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setting document base to "https://www.ebi.ac.uk/pdbe/entry/pdb/3mw6/ligands"
(C) 2012 Jmol Development
Jmol Version: 14.3.6_2014.08.17b 2014-08-17 17:24
java.vendor: Java2Script (HTML5)
java.version: JSmol 14.3.6_2014.08.14
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
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Jmol getValue APPLETREADYCallback Jmol._readyCallback
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Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
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Jmol getValue SYNCCallback null
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Jmol applet _PDBE_JMOL__462189266911571__ ready
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescript.z.js
script 1 started
FileManager.getAtomSetCollectionFromFile(https://www.ebi.ac.uk/pdbe/entry-files/download/3mw6.cif)
FileManager opening 1 https://www.ebi.ac.uk/pdbe/entry-files/download/3mw6.cif
The Resolver thinks MMCif
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/adapter/readers/cif/MMCifReader.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/adapter/readers/cif/CifReader.js
-- required by J.adapter.readers.cif.MMCifReader
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/CifDataParser.js
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-- required by J.renderbio.BioShapeRenderer
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/Mesh.js
TITLE: N. meningitidis 1681 is a member of the FinO family of RNA chaperones.
Setting space group name to HM:C 1 2 1
found biomolecule 1: A,B,H,I
found biomolecule 2: C,D,G,J,K
found biomolecule 3: D,K
found biomolecule 3: E,L
found biomolecule 3: F,M
found biomolecule 4: E,F,L,M
assembly operator 1 x,y,z
assembly operator 2 -x-1,y,-z
assembly operator 3 -x-1/2,y-1/2,-z
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coresym.z.js
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-- required by JU.Eigen
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/EigenSort.js
Time for openFile(*3mw6): 2152 ms
reading 5597 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: AB
Default Van der Waals type for model set to Jmol
5597 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
TITLE: N. meningitidis 1681 is a member of the FinO family of RNA chaperones.
found biomolecule 1: A,B,H,I
found biomolecule 2: C,D,G,J,K
found biomolecule 3: D,K
found biomolecule 3: E,L
found biomolecule 3: F,M
found biomolecule 4: E,F,L,M
Script completed
Jmol script terminated
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JV/PropertyManager.js
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-- required by JV.PropertyManager
script 2 started
antialiasDisplay = true
antialiasTranslucent = true
debugScript = false
showScript = 0
chainCaseSensitive = true
measurementUnits = "angstroms"
autobond = true
forceAutoBond = true
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescriptcmd.z.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/Halos.js
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-- required by J.shapesurface.Contact
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/MeshCollection.js
-- required by J.shapesurface.Isosurface
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/XmlUtil.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/c/HB.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/ContactPair.js
contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;
Contact pairs: 0
Contacts: 0
RasMol pseudo-hbond calculation
0 hydrogen bonds
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coretext.z.js
Script completed
Jmol script terminated
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/render/HalosRenderer.js
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