Ligands and environments ‹ 3n0l ‹ Protein Data Bank in Europe (PDBe)

SO4 415(A) Environment details ›

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FileManager.getAtomSetCollectionFromFile(https://www.ebi.ac.uk/pdbe/entry-files/download/3n0l.cif)

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The Resolver thinks MMCif

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TITLE: Crystal structure of serine hydroxymethyltransferase from Campylobacter jejuni

Setting space group name to HM:P 21 21 21

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coresym.z.js

Time for openFile(*3n0l): 1622 ms

reading 6910 atoms

ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

6910 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

TITLE: Crystal structure of serine hydroxymethyltransferase from Campylobacter jejuni

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S

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antialiasDisplay = true

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chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

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contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 4

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/jvxl/readers/IsoIntersectReader.js

Contacts: 4 with net volume 0.826410388318922 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

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script 3 started

antialiasDisplay = true

antialiasTranslucent = true

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showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 9

Contacts: 6 with net volume 2.614808827447441 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

Script completed

Jmol script terminated

script 4 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 2

Contacts: 1 with net volume 0.8955966585884196 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 5 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 4

Contacts: 4 with net volume 1.4223173076536282 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 6 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 15

Contacts: 9 with net volume 6.91769823340422 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 7 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 20

Contacts: 9 with net volume 7.132508477396203 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 8 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 16

Contacts: 12 with net volume 7.078847554605828 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 9 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 10

Contacts: 3 with net volume 1.9105676404807872 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 10 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 14

Contacts: 5 with net volume 4.586943161950855 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 11 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 10

Contacts: 6 with net volume 3.0147373742949197 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

Script completed

Jmol script terminated

script 12 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 6

Contacts: 5 with net volume 4.175229255204795 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

Script completed

Jmol script terminated

script 13 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 11

Contacts: 8 with net volume 5.157821776110023 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 14 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 10

Contacts: 7 with net volume 7.652796824211877 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 15 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 15

Contacts: 9 with net volume 8.738661896974023 A^3

RasMol pseudo-hbond calculation

1 hydrogen bonds

Script completed

Jmol script terminated

script 16 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 15

Contacts: 11 with net volume 7.178568372936575 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

Script completed

Jmol script terminated

script 17 started

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script 18 started

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Jmol script terminated

script 19 started

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Jmol script terminated

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SO4 416(A) Environment details ›

SO4 417(A) Environment details ›

SO4 418(A) Environment details ›

SO4 419(A) Environment details ›

SO4 420(A) Environment details ›

SO4 421(A) Environment details ›

SO4 422(A) Environment details ›

SO4 415(B) Environment details ›

SO4 416(B) Environment details ›

SO4 417(B) Environment details ›

SO4 418(B) Environment details ›

SO4 419(B) Environment details ›

SO4 420(B) Environment details ›

SO4 421(B) Environment details ›

Protein Data Bank in Europe

1 bound ligand:

1 modified residue:

Quick links

PDBe › 3n0l › Ligands and Environments

1 bound ligand:

1 modified residue:

Quick links

3n0l › Ligands and Environments