› 3pgv

X-ray diffraction
2.39Å resolution

Crystal structure of a haloacid dehalogenase-like hydrolase (KPN_04322) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 2.39 A resolution

Released:
DOI: 10.2210/pdb3pgv/pdb
PDB entry 3pgv coloured by chain, front view.
PDB entry 3pgv coloured by chain, side view.
PDB entry 3pgv coloured by chain, top view.
Source organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108100 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Conserved protein, phosphatase-like domain Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 285 amino acids
Theoretical weight: 33 KDa
Source organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Expression system: Escherichia coli
UniProt:
  • Canonical: A6TGK6 (Residues: 1-266; Coverage: 100%)
Gene names: KPN_04322, yigL
Sequence domains: haloacid dehalogenase-like hydrolase
Structure domains:

Ligands and Environments

4 bound ligands:
Ligand CA 4 x CA
Ligand EPE 4 x EPE
Ligand GOL 4 x GOL
Ligand EDO 18 x EDO
1 modified residue:
Ligand MSE 48 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SSRL BEAMLINE BL11-1
Spacegroup: C2
Unit cell:
a: 118.569Å b: 61.961Å c: 169.407Å
α: 90° β: 94.19° γ: 90°
R-values:
R R work R free
0.169 0.167 0.211
Expression system: Escherichia coli

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