3q2a Citations

Crystallographic analysis of active site contributions to regiospecificity in the diiron enzyme toluene 4-monooxygenase.

Biochemistry 51 1101-13 (2012)
Related entries: 3q14, 3q3m, 3q3n, 3q3o, 3ri7, 3rmk

Cited: 11 times
EuropePMC logo PMID: 22264099

Abstract

Crystal structures of toluene 4-monooxygenase hydroxylase in complex with reaction products and effector protein reveal active site interactions leading to regiospecificity. Complexes with phenolic products yield an asymmetric μ-phenoxo-bridged diiron center and a shift of diiron ligand E231 into a hydrogen bonding position with conserved T201. In contrast, complexes with inhibitors p-NH(2)-benzoate and p-Br-benzoate showed a μ-1,1 coordination of carboxylate oxygen between the iron atoms and only a partial shift in the position of E231. Among active site residues, F176 trapped the aromatic ring of products against a surface of the active site cavity formed by G103, E104 and A107, while F196 positioned the aromatic ring against this surface via a π-stacking interaction. The proximity of G103 and F176 to the para substituent of the substrate aromatic ring and the structure of G103L T4moHD suggest how changes in regiospecificity arise from mutations at G103. Although effector protein binding produced significant shifts in the positions of residues along the outer portion of the active site (T201, N202, and Q228) and in some iron ligands (E231 and E197), surprisingly minor shifts (<1 Å) were produced in F176, F196, and other interior residues of the active site. Likewise, products bound to the diiron center in either the presence or absence of effector protein did not significantly shift the position of the interior residues, suggesting that positioning of the cognate substrates will not be strongly influenced by effector protein binding. Thus, changes in product distributions in the absence of the effector protein are proposed to arise from differences in rates of chemical steps of the reaction relative to motion of substrates within the active site channel of the uncomplexed, less efficient enzyme, while structural changes in diiron ligand geometry associated with cycling between diferrous and diferric states are discussed for their potential contribution to product release.

Articles citing this publication (11)

  1. In-crystal reaction cycle of a toluene-bound diiron hydroxylase. Acheson JF, Bailey LJ, Brunold TC, Fox BG. Nature 544 191-195 (2017)
  2. Mechanism for Six-Electron Aryl-N-Oxygenation by the Non-Heme Diiron Enzyme CmlI. Komor AJ, Rivard BS, Fan R, Guo Y, Que L, Lipscomb JD. J. Am. Chem. Soc. 138 7411-7421 (2016)
  3. Structural basis for biomolecular recognition in overlapping binding sites in a diiron enzyme system. Acheson JF, Bailey LJ, Elsen NL, Fox BG. Nat Commun 5 5009 (2014)
  4. A flexible glutamine regulates the catalytic activity of toluene o-xylene monooxygenase. Liang AD, Wrobel AT, Lippard SJ. Biochemistry 53 3585-3592 (2014)
  5. Component interactions and electron transfer in toluene/o-xylene monooxygenase. Liang AD, Lippard SJ. Biochemistry 53 7368-7375 (2014)
  6. The role of substrate binding pocket residues phenylalanine 176 and phenylalanine 196 on Pseudomonas sp. OX1 toluene o-xylene monooxygenase activity and regiospecificity. Sönmez B, Yanık-Yıldırım KC, Wood TK, Vardar-Schara G. Biotechnol. Bioeng. 111 1506-1512 (2014)
  7. Cavity residue leucine 95 and channel residues glutamine 204, aspartic acid 211, and phenylalanine 269 of toluene o-xylene monooxygenase influence catalysis. Kurt C, Sönmez B, Vardar N, Yanık-Yıldırım KC, Vardar-Schara G. Appl. Microbiol. Biotechnol. 100 7599-7609 (2016)
  8. Saturation mutagenesis of Bradyrhizobium sp. BTAi1 toluene 4-monooxygenase at alpha-subunit residues proline 101, proline 103, and histidine 214 for regiospecific oxidation of aromatics. Yanık-Yıldırım KC, Vardar-Schara G. Appl. Microbiol. Biotechnol. 98 8975-8986 (2014)
  9. MhpA Is a Hydroxylase Catalyzing the Initial Reaction of 3-(3-Hydroxyphenyl)Propionate Catabolism in Escherichia coli K-12. Xu Y, Zhou NY. Appl Environ Microbiol 86 (2020)
  10. Regiospecific Oxidation of Chlorobenzene to 4-Chlororesorcinol, Chlorohydroquinone, 3-Chlorocatechol and 4-Chlorocatechol by Engineered Toluene o-Xylene Monooxygenases. Yanık-Yıldırım KC, Phul OK, Roth OS, Tlatelpa A, Soria-P G, Vardar-Yel N, Vardar-Schara G. Appl Environ Microbiol 88 e0035822 (2022)
  11. Single Turnover Reveals Oxygenated Intermediates in Toluene/o-Xylene Monooxygenase in the Presence of the Native Redox Partners. Liang AD, Lippard SJ. J. Am. Chem. Soc. 137 10520-10523 (2015)