› 3s8d

X-ray diffraction
2.31Å resolution

Crystal Structure of RipA from Yersinia pestis

Released:
DOI: 10.2210/pdb3s8d/pdb
PDB entry 3s8d coloured by chain, front view.
PDB entry 3s8d coloured by chain, side view.
PDB entry 3s8d coloured by chain, top view.
Source organism: Yersinia pestis
Primary publication:
Biochemical, structural and molecular dynamics analyses of the potential virulence factor RipA from Yersinia pestis.
Torres R, Swift RV, Chim N, Wheatley N, Lan B, Atwood BR, Pujol C, Sankaran B, Bliska JB, Amaro RE, Goulding CW
PLoS One 6 e25084 (2011)
PMID: 21966419

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-195615 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
4-hydroxybutyrate coenzyme A transferase Chains: A, B
Molecule details ›
Chains: A, B
Length: 455 amino acids
Theoretical weight: 50.74 KDa
Source organism: Yersinia pestis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: Q9ZC36 (Residues: 1-440; Coverage: 100%)
Gene name: YPO1926
Sequence domains:

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 26 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: C2
Unit cell:
a: 117.533Å b: 109.306Å c: 85.303Å
α: 90° β: 120.2° γ: 90°
R-values:
R R work R free
0.204 0.201 0.263
Expression system: Escherichia coli BL21(DE3)

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Citations

6 citation in other articles

POVME 2.0: An Enhanced Tool for Determining Pocket Shape and Volume Characteristics.
Durrant et al. (2014)
5 more

1 mention without citation

Biochemical, structural and molecular dynamics analyses of the potential virulence factor RipA from Yersinia pestis.
Torres et al. (2011)