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Structural characterization of a GII.4 2004 norovirus variant (TCH05) bound to Secretor Lewis HBGA (LeB)

Source organism: Norovirus Hu/GII.4/2004/NL
Biochemical function: not assigned
Biological process: not assigned
Cellular component: not assigned

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GO terms

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Sequence family

Pfam Protein family (Pfam)
PF08435
Domain description: Calicivirus coat protein C-terminal
Occurring in:
  1. Capsid
The deposited structure of PDB entry 3sej contains 10 copies of Pfam domain PF08435 (Calicivirus coat protein C-terminal) in Capsid. Showing 1 copy in chain C.

InterPro InterPro annotation
IPR013643
Domain description: Calicivirus coat protein C-terminal
Occurring in:
  1. Capsid

Structure domains

CATH CATH domains
2.40.510.10
Class: Mainly Beta
Architecture: Beta Barrel
Topology: Nucleoplasmin-like/VP (viral coat and capsid proteins)
Homology: Positive stranded ssRNA viruses
Occurring in:
  1. Capsid
The deposited structure of PDB entry 3sej contains 10 copies of CATH domain 2.40.510.10 (Nucleoplasmin-like/VP (viral coat and capsid proteins)) in Capsid. Showing 1 copy in chain C.
2.40.30.120
Class: Mainly Beta
Architecture: Beta Barrel
Topology: Elongation Factor Tu (Ef-tu); domain 3
Homology: Positive stranded ssRNA viruses
Occurring in:
  1. Capsid
The deposited structure of PDB entry 3sej contains 10 copies of CATH domain 2.40.30.120 (Elongation Factor Tu (Ef-tu); domain 3) in Capsid. Showing 1 copy in chain C.

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