› 3vb9

X-ray diffraction
2.1Å resolution

Crystal structure of VPA0735 from Vibrio parahaemolyticus in monoclinic form, NorthEast Structural Genomics target VpR109

Released:
DOI: 10.2210/pdb3vb9/pdb
PDB entry 3vb9 coloured by chain, front view.
PDB entry 3vb9 coloured by chain, side view.
PDB entry 3vb9 coloured by chain, top view.
Source organism: Vibrio parahaemolyticus
Entry authors: Seetharaman J, Neely H, Cunningham K, Ciccosanti C, Bjelic S, Acton TB, Xiao R, Everett JK, Montelione GT, Tong L, Hunt JF, Northeast Structural Genomics Consortium (NESG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-567405 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DUF1254 domain-containing protein Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 483 amino acids
Theoretical weight: 55.94 KDa
Source organism: Vibrio parahaemolyticus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q87I71 (Residues: 1-483; Coverage: 100%)
Gene name: VPA0735
Sequence domains:
Structure domains:

Ligands and Environments

1 bound ligand:
Ligand MG 7 x MG
1 modified residue:
Ligand MSE 64 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X4A
Spacegroup: P21
Unit cell:
a: 63.267Å b: 106.929Å c: 157.178Å
α: 90° β: 94.8° γ: 90°
R-values:
R R work R free
0.224 0.224 0.274
Expression system: Escherichia coli

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