3w3a

X-ray diffraction
3.9Å resolution

Crystal structure of V1-ATPase at 3.9 angstrom resolution

Released:

Function and Biology Details

Structure analysis Details

Assemblies composition:
hetero octamer (preferred)
hetero hexamer
hetero dimer
Assembly name:
PDBe Complex ID:
PDB-CPX-131513 (preferred)
Entry contents:
4 distinct polypeptide molecules
Macromolecules (4 distinct):
V-type ATP synthase beta chain Chains: D, E, F, L, M, N
Molecule details ›
Chains: D, E, F, L, M, N
Length: 457 amino acids
Theoretical weight: 50.85 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: Q56404 (Residues: 7-463; Coverage: 96%)
Gene names: TTHA1272, atpB
Sequence domains:
Structure domains: Rossmann fold
V-type ATP synthase subunit D Chains: G, O
Molecule details ›
Chains: G, O
Length: 210 amino acids
Theoretical weight: 23.35 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: O87880 (Residues: 2-211; Coverage: 94%)
Gene names: TTHA1271, atpD, vatD
Sequence domains: ATP synthase subunit D
Structure domains: Helix Hairpins
V-type ATP synthase subunit F Chains: H, P
Molecule details ›
Chains: H, P
Length: 100 amino acids
Theoretical weight: 10.82 KDa
Source organism: Thermus thermophilus HB8
UniProt:
  • Canonical: P74903 (Residues: 1-100; Coverage: 96%)
Gene names: TTHA1274, atpF, vatF
Sequence domains: ATP synthase (F/14-kDa) subunit
Structure domains: ATPase, V1 complex, subunit F

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL41XU
Spacegroup: P321
Unit cell:
a: 382.144Å b: 382.144Å c: 148.248Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.328 0.328 0.381