› 4a1i

X-ray diffraction
1.76Å resolution

ykud from B.subtilis

Released:
DOI: 10.2210/pdb4a1i/pdb
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PDB entry 4a1i coloured by chain, front view.
PDB entry 4a1i coloured by chain, side view.
PDB entry 4a1i coloured by chain, top view.
Source organism: Bacillus subtilis
Entry authors: Blaise M, Fuglsang Midtgaard S, Roi Midtgaard S, Boesen T, Thirup S

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-128604 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Putative L,D-transpeptidase YkuD Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 165 amino acids
Theoretical weight: 17.6 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: O34816 (Residues: 1-164; Coverage: 100%)
Gene names: BSU14040, ykuD
Sequence domains:
Structure domains:

Ligands and Environments

3 bound ligands:
Ligand SO4 22 x SO4
Ligand CD 8 x CD
Ligand CL 8 x CL
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P21
Unit cell:
a: 55.45Å b: 91.85Å c: 123.7Å
α: 90° β: 90.25° γ: 90°
R-values:
R R work R free
0.174 0.173 0.218
Expression system: Escherichia coli BL21

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