› 4d62

X-ray diffraction
2.5Å resolution

Structure of the carboxy-terminal domain of the turkey type 3 siadenovirus fibre, avirulent form complexed with 3-sialyllactose.

Released:
DOI: 10.2210/pdb4d62/pdb
PDB entry 4d62 coloured by chain, front view.
PDB entry 4d62 coloured by chain, side view.
PDB entry 4d62 coloured by chain, top view.
Source organism: Avirulent turkey hemorrhagic enteritis virus
Primary publication:
Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3.
Singh AK, Berbís MÁ, Ballmann MZ, Kilcoyne M, Menéndez M, Nguyen TH, Joshi L, Cañada FJ, Jiménez-Barbero J, Benkő M, Harrach B, van Raaij MJ
OpenAccess logo PLoS One 10 e0139339 (2015)
PMID: 26418008

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-245158 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
FIBER KNOB DOMAIN Chain: A
Molecule details ›
Chain: A
Length: 187 amino acids
Theoretical weight: 20.61 KDa
Source organism: Avirulent turkey hemorrhagic enteritis virus
Expression system: Escherichia coli BL21(DE3)

Ligands and Environments

1 bound ligand:
Ligand SIA 1 x SIA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE BM30A
Spacegroup: I23
Unit cell:
a: 98.31Å b: 98.31Å c: 98.31Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.196 0.193 0.254
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

4 review citations

Adenovirus Structure: What Is New?
Gallardo et al. (2021)
3 more

3 mentions without citation

Structure and Sialyllactose Binding of the Carboxy-Terminal Head Domain of the Fibre from a Siadenovirus, Turkey Adenovirus 3.
Singh et al. (2015)
2 more