› 4orv

X-ray diffraction
2.5Å resolution

Crystal structure of the ternary complex of camel peptidoglycan recognition protein PGRP-S with 7- phenylheptanoic acid and N- acetylglucosamine at 2.50 A resolution

Released:
DOI: 10.2210/pdb4orv/pdb
PDB entry 4orv coloured by chain, front view.
PDB entry 4orv coloured by chain, side view.
PDB entry 4orv coloured by chain, top view.
Source organism: Camelus dromedarius
Entry authors: Yamini S, Sharma P, Yadav SP, Sinha M, Bhushan A, Kaur P, Sharma S, Singh TP

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-190401 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Peptidoglycan recognition protein 1 Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 171 amino acids
Theoretical weight: 19.01 KDa
Source organism: Camelus dromedarius
UniProt:
  • Canonical: Q9GK12 (Residues: 23-193; Coverage: 99%)
Gene names: PGLYRP, PGLYRP1, PGRP
Sequence domains: N-acetylmuramoyl-L-alanine amidase
Structure domains: Peptidoglycan recognition protein-like

Ligands and Environments

4 bound ligands:
Ligand XXC 2 x XXC
Ligand TLA 1 x TLA
Ligand NAG 1 x NAG
Ligand GOL 1 x GOL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE BM14
Spacegroup: I222
Unit cell:
a: 89.535Å b: 101.56Å c: 163.457Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.211 0.21 0.231

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