4aqj Citations

Structural characterization of S100A15 reveals a novel zinc coordination site among S100 proteins and altered surface chemistry with functional implications for receptor binding.

OpenAccess logo BMC Struct Biol 12 16 (2012)
Cited: 12 times
EuropePMC logo PMID: 22747601

Abstract

Background

S100 proteins are a family of small, EF-hand containing calcium-binding signaling proteins that are implicated in many cancers. While the majority of human S100 proteins share 25-65% sequence similarity, S100A7 and its recently identified paralog, S100A15, display 93% sequence identity. Intriguingly, however, S100A7 and S100A15 serve distinct roles in inflammatory skin disease; S100A7 signals through the receptor for advanced glycation products (RAGE) in a zinc-dependent manner, while S100A15 signals through a yet unidentified G-protein coupled receptor in a zinc-independent manner. Of the seven divergent residues that differentiate S100A7 and S100A15, four cluster in a zinc-binding region and the remaining three localize to a predicted receptor-binding surface.

Results

To investigate the structural and functional consequences of these divergent clusters, we report the X-ray crystal structures of S100A15 and S100A7D24G, a hybrid variant where the zinc ligand Asp24 of S100A7 has been substituted with the glycine of S100A15, to 1.7 Å and 1.6 Å resolution, respectively. Remarkably, despite replacement of the Asp ligand, zinc binding is retained at the S100A15 dimer interface with distorted tetrahedral geometry and a chloride ion serving as an exogenous fourth ligand. Zinc binding was confirmed using anomalous difference maps and solution binding studies that revealed similar affinities of zinc for S100A15 and S100A7. Additionally, the predicted receptor-binding surface on S100A7 is substantially more basic in S100A15 without incurring structural rearrangement.

Conclusion

Here we demonstrate that S100A15 retains the ability to coordinate zinc through incorporation of an exogenous ligand resulting in a unique zinc-binding site among S100 proteins. The altered surface chemistry between S100A7 and S100A15 that localizes to the predicted receptor binding site is likely responsible for the differential recognition of distinct protein targets. Collectively, these data provide novel insight into the structural and functional consequences of the divergent surfaces between S100A7 and S100A15 that may be exploited for targeted therapies.

Articles - 4aqj mentioned but not cited (1)



Reviews citing this publication (3)

  1. Binding of transition metals to S100 proteins. Gilston BA, Skaar EP, Chazin WJ. Sci China Life Sci 59 792-801 (2016)
  2. S100 Proteins as Novel Therapeutic Targets in Psoriasis and Other Autoimmune Diseases. Kurpet K, Chwatko G. Molecules 27 6640 (2022)
  3. Regulation of zinc-dependent enzymes by metal carrier proteins. Thompson MW. Biometals 35 187-213 (2022)

Articles citing this publication (8)

  1. The Structure of the RAGE:S100A6 Complex Reveals a Unique Mode of Homodimerization for S100 Proteins. Yatime L, Betzer C, Jensen RK, Mortensen S, Jensen PH, Andersen GR. Structure 24 2043-2052 (2016)
  2. Multiple Evolutionary Origins of Ubiquitous Cu2+ and Zn2+ Binding in the S100 Protein Family. Wheeler LC, Donor MT, Prell JS, Harms MJ. PLoS ONE 11 e0164740 (2016)
  3. Crystal structure of human S100A8 in complex with zinc and calcium. Lin H, Andersen GR, Yatime L. BMC Struct. Biol. 16 8 (2016)
  4. S100 Proteins in the Innate Immune Response to Pathogens. Kozlyuk N, Monteith AJ, Garcia V, Damo SM, Skaar EP, Chazin WJ. Methods Mol. Biol. 1929 275-290 (2019)
  5. Optimal Mutant Model of Human S100A3 Protein Citrullinated at Arg51 by Peptidylarginine Deiminase Type III and Its Solution Structural Properties. Ite K, Yonezawa K, Kitanishi K, Shimizu N, Unno M. ACS Omega 5 4032-4042 (2020)
  6. Adherence Enables Neisseria gonorrhoeae to Overcome Zinc Limitation Imposed by Nutritional Immunity Proteins. Ray JC, Smirnov A, Maurakis SA, Harrison SA, Ke E, Chazin WJ, Cornelissen CN, Criss AK. Infect Immun 90 e0000922 (2022)
  7. Comparative analysis of the physical properties of murine and human S100A7: Insight into why zinc piracy is mediated by human but not murine S100A7. Harrison SA, Naretto A, Balakrishnan S, Perera YR, Chazin WJ. J Biol Chem 299 105292 (2023)
  8. Solving the crystal structure of human calcium-free S100Z: the siege and conquer of one of the last S100 family strongholds. Calderone V, Fragai M, Gallo G, Luchinat C. J. Biol. Inorg. Chem. 22 519-526 (2017)