4c85

X-ray diffraction
2.5Å resolution

zebrafish ZNRF3 ectodomain crystal form II

Released:

Function and Biology Details

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-107776 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
E3 ubiquitin-protein ligase znrf3 Chains: A, B
Molecule details ›
Chains: A, B
Length: 164 amino acids
Theoretical weight: 18.16 KDa
Source organism: Danio rerio
Expression system: Homo sapiens
UniProt:
  • Canonical: A5WWA0 (Residues: 30-181; Coverage: 18%)
Gene names: si:dkeyp-7c9.3, znrf3
Sequence domains: ZNRF-3 Ectodomain
Structure domains: Glucose Oxidase; domain 1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I24
Spacegroup: P41212
Unit cell:
a: 52.367Å b: 52.367Å c: 204.193Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.225 0.221 0.301
Expression system: Homo sapiens