4c8t

X-ray diffraction
2.4Å resolution

Xenopus ZNRF3 ectodomain crystal form I

Released:

Function and Biology Details

Reaction catalysed:
S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
PDBe Complex ID:
PDB-CPX-170727 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
E3 ubiquitin-protein ligase ZNRF3 Chains: A, B
Molecule details ›
Chains: A, B
Length: 182 amino acids
Theoretical weight: 20.49 KDa
Source organism: Xenopus tropicalis
Expression system: Homo sapiens
UniProt:
  • Canonical: Q08D68 (Residues: 24-191; Coverage: 20%)
Gene name: znrf3
Sequence domains: ZNRF-3 Ectodomain
Structure domains: Glucose Oxidase; domain 1

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: DIAMOND BEAMLINE I02
Spacegroup: P21
Unit cell:
a: 49.212Å b: 58.669Å c: 52.73Å
α: 90° β: 93.58° γ: 90°
R-values:
R R work R free
0.218 0.215 0.265
Expression system: Homo sapiens