4ckb

X-ray diffraction
2.8Å resolution

Vaccinia virus capping enzyme complexed with GTP and SAH

Released:

Function and Biology Details

Reactions catalysed:
S-adenosyl-L-methionine + a 5'-(5'-triphosphoguanosine)-[mRNA] = S-adenosyl-L-homocysteine + a 5'-(N(7)-methyl 5'-triphosphoguanosine)-[mRNA]
GTP + a 5'-diphospho-[mRNA] = diphosphate + a 5'-(5'-triphosphoguanosine)-[mRNA]
A 5'-triphospho-[mRNA] + H(2)O = a 5'-diphospho-[mRNA] + phosphate
Biochemical function:
Cellular component:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-137587 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
mRNA-capping enzyme catalytic subunit Chains: A, D
mRNA-capping enzyme regulatory subunit OPG124 Chains: B, E
Molecule details ›
Chains: B, E
Length: 287 amino acids
Theoretical weight: 33.4 KDa
Source organism: Vaccinia virus
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P04318 (Residues: 1-287; Coverage: 100%)
Gene names: D12L, OPG124, VACWR117
Sequence domains: Poxvirus mRNA capping enzyme, small subunit
Structure domains: Poxvirus mRNA capping enzyme, small subunit

Ligands and Environments


Cofactor: Ligand SAH 2 x SAH
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-4
Spacegroup: P1
Unit cell:
a: 60.34Å b: 197.73Å c: 61.11Å
α: 90.13° β: 109.27° γ: 94.05°
R-values:
R R work R free
0.211 0.209 0.255
Expression system: Escherichia coli BL21(DE3)