› 4d77

X-ray diffraction
1.48Å resolution

High-resolution structure of the extracellular olfactomedin domain from gliomedin

Released:
DOI: 10.2210/pdb4d77/pdb
PDB entry 4d77 coloured by chain, front view.
PDB entry 4d77 coloured by chain, side view.
PDB entry 4d77 coloured by chain, top view.
Source organism: Rattus norvegicus
Primary publication:
The olfactomedin domain from gliomedin is a β-propeller with unique structural properties.
Han H, Kursula P
J Biol Chem 290 3612-21 (2015)
PMID: 25525261

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-182401 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Gliomedin shedded ectodomain Chain: A
Molecule details ›
Chain: A
Length: 285 amino acids
Theoretical weight: 32.44 KDa
Source organism: Rattus norvegicus
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q80WL1 (Residues: 260-543; Coverage: 52%)
Gene name: Gldn
Sequence domains: Olfactomedin-like domain

Ligands and Environments

2 bound ligands:
Ligand NA 1 x NA
Ligand MPD 3 x MPD
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID29
Spacegroup: P212121
Unit cell:
a: 45.84Å b: 62.48Å c: 88.29Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.139 0.137 0.163
Expression system: Spodoptera frugiperda

Quick links

Citations

2 review citations

Mechanisms of node of Ranvier assembly.
Rasband et al. (2021)
1 more

3 mentions without citation

Molecular Details of Olfactomedin Domains Provide Pathway to Structure-Function Studies.
Hill et al. (2015)
2 more