› 4d9z

X-ray diffraction
1.71Å resolution

Lysozyme at 318K

Released:
DOI: 10.2210/pdb4d9z/pdb
PDB entry 4d9z coloured by chain, front view.
PDB entry 4d9z coloured by chain, side view.
PDB entry 4d9z coloured by chain, top view.
Source organism: Gallus gallus
Primary publication:
Characterization of heat induced spherulites of lysozyme reveals new insight on amyloid initiation.
Sharma P, Verma N, Singh PK, Korpole S
OpenAccess logo Sci Rep 6 22475 (2016)
PMID: 26926993

Function and Biology Details

Reaction catalysed: 
Hydrolysis of (1->4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins
Biochemical function:
Biological process:
Cellular component:
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-132831 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lysozyme C Chain: A
Molecule details ›
Chain: A
Length: 129 amino acids
Theoretical weight: 14.33 KDa
Source organism: Gallus gallus
UniProt:
  • Canonical: P00698 (Residues: 19-147; Coverage: 100%)
Gene name: LYZ
Sequence domains: C-type lysozyme/alpha-lactalbumin family
Structure domains: Lysozyme

Ligands and Environments

3 bound ligands:
Ligand CL 4 x CL
Ligand GOL 1 x GOL
Ligand NA 2 x NA
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU MICROMAX-007 HF
Spacegroup: P212121
Unit cell:
a: 30.01Å b: 55.954Å c: 72.484Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.184 0.182 0.228

Quick links

Citations

6 citation in other articles

Anti-Candida albicans effect of the protein-carbohydrate fraction obtained from the coelomic fluid of earthworm Dendrobaena veneta.
Fiołka et al. (2019)
5 more

2 mentions without citation

Characterization of heat induced spherulites of lysozyme reveals new insight on amyloid initiation.
Sharma et al. (2016)
1 more