4gza

X-ray diffraction
7Å resolution

Complex of mouse Plexin A2 - Semaphorin 3A - Neuropilin-1

Released:
Model geometry
Fit model/data
Source organism: Mus musculus

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero hexadecamer (preferred)
PDBe Complex ID:
PDB-CPX-126648 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Plexin-A2 Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 681 amino acids
Theoretical weight: 75.93 KDa
Source organism: Mus musculus
Expression system: Homo sapiens
UniProt:
  • Canonical: P70207 (Residues: 33-703; Coverage: 36%)
Gene names: Kiaa0463, Plxna2
Sequence domains:
Semaphorin-3A Chain: G
Molecule details ›
Chain: G
Length: 538 amino acids
Theoretical weight: 61.25 KDa
Source organism: Mus musculus
Expression system: Homo sapiens
UniProt:
  • Canonical: O08665 (Residues: 21-555; Coverage: 71%)
Gene names: SemD, Sema3a, Semad
Sequence domains: Sema domain
Neuropilin-1 Chain: H

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: DIAMOND BEAMLINE I04-1, DIAMOND BEAMLINE I03, DIAMOND BEAMLINE I02
Spacegroup: C2
Unit cell:
a: 191.632Å b: 293.604Å c: 252.176Å
α: 90° β: 106.38° γ: 90°
R-values:
R R work R free
0.285 0.285 0.285
Expression system: Homo sapiens