› 4hwm

X-ray diffraction
1.38Å resolution

Crystal structure of a lipoprotein YedD (KPN_02420) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 1.38 A resolution

Released:
DOI: 10.2210/pdb4hwm/pdb
PDB entry 4hwm coloured by chain, front view.
PDB entry 4hwm coloured by chain, side view.
PDB entry 4hwm coloured by chain, top view.
Source organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Entry author: Joint Center for Structural Genomics (JCSG)

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108064 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Lipoprotein Chain: A
Molecule details ›
Chain: A
Length: 130 amino acids
Theoretical weight: 14.45 KDa
Source organism: Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Expression system: Escherichia coli
UniProt:
  • Canonical: A6TB72 (Residues: 16-144; Coverage: 90%)
Gene names: KPN_02420, yedD
Sequence domains: YedD-like protein
Structure domains: YedD-like protein

Ligands and Environments

No bound ligands
1 modified residue:
Ligand MSE 4 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 8.2.2
Spacegroup: P212121
Unit cell:
a: 39.81Å b: 51.067Å c: 52.436Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.151 0.149 0.18
Expression system: Escherichia coli

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