Ligands and environments ‹ 4k3q ‹ Protein Data Bank in Europe (PDBe)

4 bound ligands:

PEG 401(A) Environment details ›

Loading 4k3q.....

PEG 402(A) Environment details ›

Loading 4k3q.....

PEG 403(A) Environment details ›

Loading 4k3q.....

PEG 404(A) Environment details ›

Loading 4k3q....

PEG 410(A) Environment details ›

Loading 4k3q....

PEG 407(B) Environment details ›

Loading 4k3q....

CA 405(A) Environment details ›

Loading 4k3q....

CA 406(A) Environment details ›

Loading 4k3q....

CA 408(A) Environment details ›

Loading 4k3q....

CA 401(B) Environment details ›

Loading 4k3q....

CA 402(B) Environment details ›

Loading 4k3q....

CA 403(B) Environment details ›

Loading 4k3q....

CA 404(B) Environment details ›

Loading 4k3q....

PGE 407(A) Environment details ›

Loading 4k3q....

PGE 409(A) Environment details ›

Loading 4k3q....

PGE 406(B) Environment details ›

Loading 4k3q....

PG4 405(B) Environment details ›

Loading 4k3q....

No modified residues

Quick links

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/package.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/core.z.js

-- required by ClazzNode

Jmol JavaScript applet _PDBE_JMOL__301624652562162__ initializing

Jmol getValue debug null

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Jmol getValue allowjavascript true

AppletRegistry.checkIn(_PDBE_JMOL__301624652562162__)

vwrOptions:

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setting document base to "https://www.ebi.ac.uk/pdbe/entry/pdb/4k3q/ligands"

Jmol Version: 14.3.6_2014.08.17b 2014-08-17 17:24

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java.version: JSmol 14.3.6_2014.08.14

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

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Jmol applet _PDBE_JMOL__301624652562162__ ready

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescript.z.js

script 1 started

FileManager.getAtomSetCollectionFromFile(https://www.ebi.ac.uk/pdbe/entry-files/download/4k3q.cif)

FileManager opening 1 https://www.ebi.ac.uk/pdbe/entry-files/download/4k3q.cif

The Resolver thinks MMCif

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/adapter/readers/cif/MMCifReader.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/adapter/readers/cif/CifReader.js

-- required by J.adapter.readers.cif.MMCifReader

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/CifDataParser.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corebio.z.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/render/MeshRenderer.js

-- required by J.renderbio.BioShapeRenderer

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/Mesh.js

TITLE: Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp

Setting space group name to HM:P 1 21 1

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coresym.z.js

Time for openFile(*4k3q): 2638 ms

reading 6629 atoms

ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

model 1.1 alternative locations: AB

Default Van der Waals type for model set to Jmol

6629 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

TITLE: Structural and Thermodynamic Dissection of Linear Motif Recognition by the E. coli Sliding Clamp

found biomolecule 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescriptmath.z.js

Script completed

Jmol script terminated

PDBe › 4k3q › Ligands and Environments

4 bound ligands:

Quick links

4k3q › Ligands and Environments