GO terms
Biochemical function:
Biological process:
Cellular component:
Sequence families
Protein families (Pfam)
RNA family (Rfam)
InterPro annotations
IPR005706
Domain description:
Small ribosomal subunit protein uS2, bacteria/mitochondria/plastid
Occurring in:
Occurring in:
IPR019984
Domain description:
Small ribosomal subunit protein uS17, bacteria/chloroplast
Occurring in:
Occurring in:
IPR005717
Domain description:
Small ribosomal subunit protein uS7, bacterial/organellar-type
Occurring in:
Occurring in:
IPR020814
Domain description:
Small ribosomal subunit protein bS6, plastid/chloroplast
Occurring in:
Occurring in:
IPR014717
Domain description:
Translation elongation factor EF1B/small ribosomal subunit protein bS6
Occurring in:
Occurring in:
IPR014721
Domain description:
Small ribosomal subunit protein uS5 domain 2-type fold, subgroup
Occurring in:
Occurring in:
IPR018192
Domain description:
Small ribosomal subunit protein uS5, N-terminal, conserved site
Occurring in:
Occurring in:
IPR023591
Domain description:
Small ribosomal subunit protein uS2, flavodoxin-like domain superfamily
Occurring in:
Occurring in:
Structure domains
CATH domains
2.40.50.140
Class:
Mainly Beta
Architecture:
Beta Barrel
Topology:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
Homology:
Nucleic acid-binding proteins
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>2.40.50.140 (OB fold (Dihydrolipoamide Acetyltransferase, E2P))</span> in <span class='highlight'>Small ribosomal subunit protein uS12</span>. Showing 1 copy in chain <span class='highlight'>L</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 2.40.50.140 (OB fold (Dihydrolipoamide Acetyltransferase, E2P)) in Small ribosomal subunit protein uS12. Showing 1 copy in chain L.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_12_L_CATH_2.40.50.140_image-200x200.png)
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>2.40.50.140 (OB fold (Dihydrolipoamide Acetyltransferase, E2P))</span> in <span class='highlight'>ribosomal protein S17</span>. Showing 1 copy in chain <span class='highlight'>Q</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 2.40.50.140 (OB fold (Dihydrolipoamide Acetyltransferase, E2P)) in ribosomal protein S17. Showing 1 copy in chain Q.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_17_Q_CATH_2.40.50.140_image-200x200.png)
3.30.230.10
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Ribosomal Protein S5; domain 2
Homology:
Ribosomal Protein S5; domain 2
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.230.10 (Ribosomal Protein S5; domain 2)</span> in <span class='highlight'>Small ribosomal subunit protein uS5</span>. Showing 1 copy in chain <span class='highlight'>E</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.230.10 (Ribosomal Protein S5; domain 2) in Small ribosomal subunit protein uS5. Showing 1 copy in chain E.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_5_E_CATH_3.30.230.10_image-200x200.png)
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.230.10 (Ribosomal Protein S5; domain 2)</span> in <span class='highlight'>Small ribosomal subunit protein uS9</span>. Showing 1 copy in chain <span class='highlight'>I</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.230.10 (Ribosomal Protein S5; domain 2) in Small ribosomal subunit protein uS9. Showing 1 copy in chain I.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_9_I_CATH_3.30.230.10_image-200x200.png)
1.10.1050.10
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
Ribosomal Protein S4 Delta 41; Chain A, domain 1
Homology:
Ribosomal Protein S4 Delta 41; Chain A, domain 1
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>1.10.1050.10 (Ribosomal Protein S4 Delta 41; Chain A, domain 1)</span> in <span class='highlight'>Small ribosomal subunit protein uS4</span>. Showing 1 copy in chain <span class='highlight'>D</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 1.10.1050.10 (Ribosomal Protein S4 Delta 41; Chain A, domain 1) in Small ribosomal subunit protein uS4. Showing 1 copy in chain D.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_4_D_CATH_1.10.1050.10_image-200x200.png)
3.40.50.10490
Class:
Alpha Beta
Architecture:
3-Layer(aba) Sandwich
Topology:
Rossmann fold
Homology:
Glucose-6-phosphate isomerase like protein; domain 1
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.40.50.10490 (Rossmann fold)</span> in <span class='highlight'>Small ribosomal subunit protein uS2</span>. Showing 1 copy in chain <span class='highlight'>B</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.40.50.10490 (Rossmann fold) in Small ribosomal subunit protein uS2. Showing 1 copy in chain B.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_2_B_CATH_3.40.50.10490_image-200x200.png)
1.20.58.110
Class:
Mainly Alpha
Architecture:
Up-down Bundle
Topology:
Methane Monooxygenase Hydroxylase; Chain G, domain 1
Homology:
Ribosomal protein S20
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>1.20.58.110 (Methane Monooxygenase Hydroxylase; Chain G, domain 1)</span> in <span class='highlight'>Small ribosomal subunit protein bS20</span>. Showing 1 copy in chain <span class='highlight'>T</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 1.20.58.110 (Methane Monooxygenase Hydroxylase; Chain G, domain 1) in Small ribosomal subunit protein bS20. Showing 1 copy in chain T.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_20_T_CATH_1.20.58.110_image-200x200.png)
3.30.860.10
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
30s Ribosomal Protein S19; Chain A
Homology:
30s Ribosomal Protein S19; Chain A
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.860.10 (30s Ribosomal Protein S19; Chain A)</span> in <span class='highlight'>Small ribosomal subunit protein uS19</span>. Showing 1 copy in chain <span class='highlight'>S</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.860.10 (30s Ribosomal Protein S19; Chain A) in Small ribosomal subunit protein uS19. Showing 1 copy in chain S.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_19_S_CATH_3.30.860.10_image-200x200.png)
4.10.640.10
Class:
Few Secondary Structures
Architecture:
Irregular
Topology:
30s Ribosomal Protein S18
Homology:
Ribosomal protein S18
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>4.10.640.10 (30s Ribosomal Protein S18)</span> in <span class='highlight'>Small ribosomal subunit protein bS18</span>. Showing 1 copy in chain <span class='highlight'>R</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 4.10.640.10 (30s Ribosomal Protein S18) in Small ribosomal subunit protein bS18. Showing 1 copy in chain R.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_18_R_CATH_4.10.640.10_image-200x200.png)
3.30.1320.10
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
S16 Ribosomal Protein; Chain: A;
Homology:
S16 Ribosomal Protein; Chain: A;
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.1320.10 (S16 Ribosomal Protein; Chain: A;)</span> in <span class='highlight'>Small ribosomal subunit protein bS16</span>. Showing 1 copy in chain <span class='highlight'>P</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.1320.10 (S16 Ribosomal Protein; Chain: A;) in Small ribosomal subunit protein bS16. Showing 1 copy in chain P.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_16_P_CATH_3.30.1320.10_image-200x200.png)
1.10.287.10
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
Helix Hairpins
Homology:
S15/NS1, RNA-binding
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>1.10.287.10 (Helix Hairpins)</span> in <span class='highlight'>Small ribosomal subunit protein uS15</span>. Showing 1 copy in chain <span class='highlight'>O</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 1.10.287.10 (Helix Hairpins) in Small ribosomal subunit protein uS15. Showing 1 copy in chain O.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_15_O_CATH_1.10.287.10_image-200x200.png)
4.10.830.10
Class:
Few Secondary Structures
Architecture:
Irregular
Topology:
30s Ribosomal Protein S14; Chain N
Homology:
30s Ribosomal Protein S14; Chain N
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>4.10.830.10 (30s Ribosomal Protein S14; Chain N)</span> in <span class='highlight'>ribosomal protein S14</span>. Showing 1 copy in chain <span class='highlight'>N</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 4.10.830.10 (30s Ribosomal Protein S14; Chain N) in ribosomal protein S14. Showing 1 copy in chain N.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_14_N_CATH_4.10.830.10_image-200x200.png)
4.10.910.10
Class:
Few Secondary Structures
Architecture:
Irregular
Topology:
30s ribosomal protein s13; domain 2
Homology:
30s ribosomal protein s13, domain 2
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>4.10.910.10 (30s ribosomal protein s13; domain 2)</span> in <span class='highlight'>Small ribosomal subunit protein uS13</span>. Showing 1 copy in chain <span class='highlight'>M</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 4.10.910.10 (30s ribosomal protein s13; domain 2) in Small ribosomal subunit protein uS13. Showing 1 copy in chain M.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_13_M_CATH_4.10.910.10_image-200x200.png)
1.10.8.50
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
Helicase, Ruva Protein; domain 3
Homology:
Helicase, Ruva Protein; domain 3
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>1.10.8.50 (Helicase, Ruva Protein; domain 3)</span> in <span class='highlight'>Small ribosomal subunit protein uS13</span>. Showing 1 copy in chain <span class='highlight'>M</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 1.10.8.50 (Helicase, Ruva Protein; domain 3) in Small ribosomal subunit protein uS13. Showing 1 copy in chain M.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_13_M_CATH_1.10.8.50_image-200x200.png)
3.30.420.80
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Nucleotidyltransferase; domain 5
Homology:
Ribosomal protein S11
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.420.80 (Nucleotidyltransferase; domain 5)</span> in <span class='highlight'>Small ribosomal subunit protein uS11</span>. Showing 1 copy in chain <span class='highlight'>K</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.420.80 (Nucleotidyltransferase; domain 5) in Small ribosomal subunit protein uS11. Showing 1 copy in chain K.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_11_K_CATH_3.30.420.80_image-200x200.png)
3.30.70.600
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Alpha-Beta Plaits
Homology:
Ribosomal protein S10 domain
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.70.600 (Alpha-Beta Plaits)</span> in <span class='highlight'>Small ribosomal subunit protein uS10</span>. Showing 1 copy in chain <span class='highlight'>J</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.70.600 (Alpha-Beta Plaits) in Small ribosomal subunit protein uS10. Showing 1 copy in chain J.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_10_J_CATH_3.30.70.600_image-200x200.png)
3.30.1490.10
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Dna Ligase; domain 1
Homology:
Dna Ligase; domain 1
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.1490.10 (Dna Ligase; domain 1)</span> in <span class='highlight'>ribosomal protein S8</span>. Showing 1 copy in chain <span class='highlight'>H</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.1490.10 (Dna Ligase; domain 1) in ribosomal protein S8. Showing 1 copy in chain H.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_8_H_CATH_3.30.1490.10_image-200x200.png)
3.30.1370.30
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Ribosomal Protein S8; Chain: A, domain 1
Homology:
Ribosomal Protein S8; Chain: A, domain 1
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.1370.30 (Ribosomal Protein S8; Chain: A, domain 1)</span> in <span class='highlight'>ribosomal protein S8</span>. Showing 1 copy in chain <span class='highlight'>H</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.1370.30 (Ribosomal Protein S8; Chain: A, domain 1) in ribosomal protein S8. Showing 1 copy in chain H.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_8_H_CATH_3.30.1370.30_image-200x200.png)
1.10.455.10
Class:
Mainly Alpha
Architecture:
Orthogonal Bundle
Topology:
Ribosomal Protein S7
Homology:
Ribosomal protein S7 domain
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>1.10.455.10 (Ribosomal Protein S7)</span> in <span class='highlight'>Small ribosomal subunit protein uS7</span>. Showing 1 copy in chain <span class='highlight'>G</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 1.10.455.10 (Ribosomal Protein S7) in Small ribosomal subunit protein uS7. Showing 1 copy in chain G.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_7_G_CATH_1.10.455.10_image-200x200.png)
3.30.70.60
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Alpha-Beta Plaits
Homology:
Alpha-Beta Plaits
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.70.60 (Alpha-Beta Plaits)</span> in <span class='highlight'>Small ribosomal subunit protein bS6</span>. Showing 1 copy in chain <span class='highlight'>F</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.70.60 (Alpha-Beta Plaits) in Small ribosomal subunit protein bS6. Showing 1 copy in chain F.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_6_F_CATH_3.30.70.60_image-200x200.png)
3.30.160.20
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Double Stranded RNA Binding Domain
Homology:
Double Stranded RNA Binding Domain
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.160.20 (Double Stranded RNA Binding Domain)</span> in <span class='highlight'>Small ribosomal subunit protein uS5</span>. Showing 1 copy in chain <span class='highlight'>E</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.160.20 (Double Stranded RNA Binding Domain) in Small ribosomal subunit protein uS5. Showing 1 copy in chain E.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_5_E_CATH_3.30.160.20_image-200x200.png)
3.10.290.10
Class:
Alpha Beta
Architecture:
Roll
Topology:
Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A
Homology:
RNA-binding S4 domain
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.10.290.10 (Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A)</span> in <span class='highlight'>Small ribosomal subunit protein uS4</span>. Showing 1 copy in chain <span class='highlight'>D</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.10.290.10 (Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A) in Small ribosomal subunit protein uS4. Showing 1 copy in chain D.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_4_D_CATH_3.10.290.10_image-200x200.png)
3.30.1140.32
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
Ribosomal protein S3 C-terminal domain
Homology:
Ribosomal protein S3, C-terminal domain
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.1140.32 (Ribosomal protein S3 C-terminal domain)</span> in <span class='highlight'>Small ribosomal subunit protein uS3</span>. Showing 1 copy in chain <span class='highlight'>C</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.1140.32 (Ribosomal protein S3 C-terminal domain) in Small ribosomal subunit protein uS3. Showing 1 copy in chain C.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_3_C_CATH_3.30.1140.32_image-200x200.png)
3.30.300.20
Class:
Alpha Beta
Architecture:
2-Layer Sandwich
Topology:
GMP Synthetase; Chain A, domain 3
Homology:
GMP Synthetase; Chain A, domain 3
Occurring in:
![The deposited structure of PDB entry <span class='highlight'>4lfc</span> contains 1 copy of CATH domain <span class='highlight'>3.30.300.20 (GMP Synthetase; Chain A, domain 3)</span> in <span class='highlight'>Small ribosomal subunit protein uS3</span>. Showing 1 copy in chain <span class='highlight'>C</span>. The deposited structure of PDB entry 4lfc contains 1 copy of CATH domain 3.30.300.20 (GMP Synthetase; Chain A, domain 3) in Small ribosomal subunit protein uS3. Showing 1 copy in chain C.](https://www.ebi.ac.uk/pdbe/static/entry/4lfc_3_C_CATH_3.30.300.20_image-200x200.png)